PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

WRKY

Protein Properties

Length: 210aa MW: 23075.8 Da PI: 9.9849

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G032469.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	68.5	9.6e-22	145	196	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK+ kgs++p + +gCp++k+ver+ +d +++++tYegeHnh+ HL.SW.v1.0.G032469.1 145 DNYSWRKYGQKPTKGSPHPS-----SVRGCPARKHVERALDDSSMLVVTYEGEHNHS 196 9****************7.....589**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	7.3E-16	95	140	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	6.2E-23	131	196	IPR003657	WRKY domain
PROSITE profile	PS50811	22.366	138	198	IPR003657	WRKY domain
SuperFamily	SSF118290	4.18E-19	141	196	IPR003657	WRKY domain
SMART	SM00774	7.7E-26	143	197	IPR003657	WRKY domain
Pfam	PF03106	3.0E-17	145	195	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
TYDQNVVVIP ITVVIERKDK DHSSSSTNTT INFSSYSTAA TTASFLSSLT GDSDTKLHHH 60 HNHHQPLSSS PGFQITNLSQ VSSVGKPPIS TSSLKRRCSF ENLGSDKCDS DSSGRCRCSK 120 KRKLRLKRVV RVPAISLKMA NIPPDNYSWR KYGQKPTKGS PHPSSVRGCP ARKHVERALD 180 DSSMLVVTYE GEHNHSLSVA ETSNLILESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	5e-16	131	197	2	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid. {ECO:0000269\|PubMed:11449049}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP229738	1e-32	KP229738.1 UNVERIFIED: Boehmeria nivea WRKY transcription factor-like (WRKY09) mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007205552.1	1e-93	probable WRKY transcription factor 7
Swissprot	O22176	1e-58	WRK15_ARATH; Probable WRKY transcription factor 15
TrEMBL	A0A2P5D1L7	2e-95	A0A2P5D1L7_TREOI; WRKY domain containing protein
STRING	EMJ06751	4e-93	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2177	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24240.1	3e-44	WRKY DNA-binding protein 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van Aken O, et al. Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases. Plant Physiol., 2016. 171(3): p. 2150-65 [PMID:27208304] Liu F, et al. Interactions of WRKY15 and WRKY33 transcription factors and their roles in the resistance of oilseed rape to Sclerotinia infection. Plant Biotechnol. J., 2018. 16(4): p. 911-925 [PMID:28929638]