PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G032354.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 238aa MW: 27392.8 Da PI: 6.1694

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G032354.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.5	1.2e-09	68	117	38	88
FAR1 38 egkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 g+re++k++ + +++raetr gC a++k++ ++++k++v +++ eH+H HL.SW.v1.0.G032354.1 68 IGHREKDKRD-VIVKSHRAETRFGCLARMKINSRQNSKYRVVDFVMEHTHV 117 5788888877.88999**********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-6	69	117	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDNTNLVEND LQSRRKIDFE SEDGILSSNV DIKSLHSKID EEAIPKVGME FNTEEEAYNF 60 YNAYAYKIGH REKDKRDVIV KSHRAETRFG CLARMKINSR QNSKYRVVDF VMEHTHVTSS 120 PSKSHLHRSQ RRLTVAQAAE IDLANISGIT PKASYDLMAR RVGGCENLGY TIVDCRNYLQ 180 SKRTIQMRVG DTGGILEYLQ SMQLEDPAFV SAMQADEDDM ITNIFWADGR MMTDYFYF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024930861.1	1e-102	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A151RKW8	3e-80	A0A151RKW8_CAJCA; Protein FAR1-RELATED SEQUENCE 5
STRING	XP_008246048.1	2e-82	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-28	FAR1-related sequence 5