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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
HL.SW.v1.0.G032344.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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| Family |
bHLH |
| Protein Properties |
Length: 227aa MW: 25807.4 Da PI: 9.0219 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G032344.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 44.1 | 3.6e-14 | 51 | 105 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC....TTS-STCHHHHHHHHHHHHHHH CS
HLH 2 rrahnerErrRRdriNsafeeLrellPkas.kapskKlsKaeiLekAveYIksLq 55
+ hn+ Er RR+++Ns ++ Lr+llP+++ kKls ++ +++ YI +Lq
HL.SW.v1.0.G032344.1 51 KLCHNASERERRKKLNSLYASLRSLLPPPPaDRLMKKLSNPSTISRTIMYIPELQ 105
678*************************662555566***************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 227 aa
Download sequence Send
to blast |
MALLEDHRRA IDHFTDSFTF YDQNIDIQSL LHQPPPSTTA VTGDDPTIVK KLCHNASERE 60
RRKKLNSLYA SLRSLLPPPP ADRLMKKLSN PSTISRTIMY IPELQNQVKG LIQKKEELLS 120
CISRRSVELI YEERHKISSS AYWRTLSNVS ASRLNERELV LQISSFKIQQ TPLSHILVDL 180
EEDGFPVLNA TSFESFGGRV FYNIHLQVEK TYKMGANNSN GNFLSS*
|
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by OBP3, auxin and salicylic acid (SA). Repressed by jasmonic acid (JA), UV LIGHT, and heat treatments. Up regulated by iron deficiency in roots and leaves, as well as by nickel, high zinc or high copper treatments. Repressed by high iron, low copper and low zinc treatments. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:12887587, ECO:0000269|PubMed:17516080}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Matsuoka K, et al.
Gibberellin-induced expression of Fe uptake-related genes in Arabidopsis.
Plant Cell Physiol., 2014. 55(1): p. 87-98
[PMID:24192296] - Li X,Zhang H,Ai Q,Liang G,Yu D
Two bHLH Transcription Factors, bHLH34 and bHLH104, Regulate Iron Homeostasis in Arabidopsis thaliana.
Plant Physiol., 2016. 170(4): p. 2478-93
[PMID:26921305] - Shen C, et al.
Involvement of endogenous salicylic acid in iron-deficiency responses in Arabidopsis.
J. Exp. Bot., 2016. 67(14): p. 4179-93
[PMID:27208542] - Liang G,Zhang H,Li X,Ai Q,Yu D
bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
J. Exp. Bot., 2017. 68(7): p. 1743-1755
[PMID:28369511] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470] - Kailasam S,Wang Y,Lo JC,Chang HF,Yeh KC
S-Nitrosoglutathione works downstream of nitric oxide to mediate iron-deficiency signaling in Arabidopsis.
Plant J., 2018. 94(1): p. 157-168
[PMID:29396986] - Kurt F,Filiz E
Genome-wide and comparative analysis of bHLH38, bHLH39, bHLH100 and bHLH101 genes in Arabidopsis, tomato, rice, soybean and maize: insights into iron (Fe) homeostasis.
Biometals, 2018. 31(4): p. 489-504
[PMID:29546482]
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