PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G032290.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ARF
Protein Properties Length: 707aa    MW: 77521.3 Da    PI: 6.899
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G032290.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23126227199
                           EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF
  HL.SW.v1.0.G032290.1 126 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVF 212
                           89****************************996555555..89********************************************** PP

                           EE-SSSEE..EEEEE-S CS
                    B3  83 kldgrsefelvvkvfrk 99 
                              + +++ l+v+++r+
  HL.SW.v1.0.G032290.1 213 L--RAENGDLCVGIRRA 227
                           *..4488999****997 PP
2Auxin_resp110.51.7e-36295378183
            Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                           aa+ as++++FevvY+Prast+eF+vk++ v++al++++++GmRfkmafetedss++++ +Gt+++v+ +d  rWp+S+Wr+L+
  HL.SW.v1.0.G032290.1 295 AATLASNGQPFEVVYYPRASTPEFCVKASLVRAALQIRWTPGMRFKMAFETEDSSRISWfMGTISSVQVSDYNRWPDSPWRLLQ 378
                           6899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-37117230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.58E-29121230IPR015300DNA-binding pseudobarrel domain
CDDcd100176.36E-21125226No hitNo description
PROSITE profilePS5086313.112126228IPR003340B3 DNA binding domain
SMARTSM010191.7E-21126228IPR003340B3 DNA binding domain
PfamPF023628.9E-22126227IPR003340B3 DNA binding domain
PfamPF065077.8E-32295378IPR010525Auxin response factor
PROSITE profilePS5174519.544614694IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MITFMESKEK LKEVEKCLDP QLWHACAGGM VQMPMVNAKV FYFPQGHAEH ACGPVDFSKN  60
LRISSFTLCK VSSIKFMADP ETDEVFAKLR LVPSSGGGVN ELGFDDDGIG GGGLNGSETQ  120
EKPASFAKTL TQSDANNGGG FSVPRYCAET IFPRLDYSAD PPVQTILAKD VHGETWKFRH  180
IYRGTPRRHL LTTGWSTFVN HKKLVAGDSI VFLRAENGDL CVGIRRAKRG MGGGTESSSG  240
WNPTGGNCAS PYGGFAAFLR DEENKMLRNG NGNGTNSNGS LMGKGKVRPE SVIEAATLAS  300
NGQPFEVVYY PRASTPEFCV KASLVRAALQ IRWTPGMRFK MAFETEDSSR ISWFMGTISS  360
VQVSDYNRWP DSPWRLLQVS WDEPDLLQNV KRVSPWLVEL VSNMPAIHLS PFSPPRKKLR  420
LPQHSDFPLD THIPMPSFTG NFFGHSNHFG CLSENTPAGM QGARQAHFGL SLSDLHFNKL  480
QPSLFQAGFP PFDHGAAPTK FSNNAMNQKS ENVSCLLTMS HTTQTPKKST DDVKTPQLIL  540
FGQPILTEQQ ISLSCSGDTV SPVVTGNSSS DGNGDKAANF SDASGCGIHQ QRLQDRSPCE  600
GFQWNKETEP NLETGHCKVF MESEDVGRTL DLSLLGSYNE LYRKLADMFG IENSETLSHA  660
LYRDGTGAVK HIGDEPFSDF MKTARRLTIL MDSGSDNLGH VKTDQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-74339932388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107532.20.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2P5FV550.0A0A2P5FV55_TREOI; Auxin response factor
STRINGXP_010107532.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]