 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
HL.SW.v1.0.G032232.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
MYB |
| Protein Properties |
Length: 374aa MW: 41391 Da PI: 6.7631 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G032232.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.2 | 2.5e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd +l+ ++ +G+g +W + ++++g++R++k+c++rw++yl
HL.SW.v1.0.G032232.1 14 KGPWSPEEDAKLKAYIDTYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
79*********************************************97 PP
|
| 2 | Myb_DNA-binding | 37.4 | 5.9e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++
HL.SW.v1.0.G032232.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
569******************.*********.***********97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0008285 | Biological Process | negative regulation of cell proliferation |
| GO:0035987 | Biological Process | endodermal cell differentiation |
| GO:0045597 | Biological Process | positive regulation of cell differentiation |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000021 | Biological Process | regulation of ion homeostasis |
| GO:2000067 | Biological Process | regulation of root morphogenesis |
| GO:0048226 | Cellular Component | Casparian strip |
| GO:0000975 | Molecular Function | regulatory region DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 374 aa
Download sequence Send
to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKAYID TYGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120
RKQSHGTRIL SSAAAAAAVD GKEPAAGGLL EDSETLSSSA IERLQLHMQL QSLQNPLSFY 180
NNPALWPKLH PYQQKMIQQS FHSLNVNPSP NPNNPELIIT QNPMIMQVHN SHHVISPNNH 240
HDHEQGDFYG SSAADMAVHE DNQISGAKGS SDQTGNIQAF QAELEGILNG SAADHGGTVG 300
FHDQMGSDGF DCFKDMNGVV SKDSLLWWSS EFDASKSSSS NSWESTSVVL DHHHQSNNEM 360
FHDHHYDQMS YGL*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
