PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 793aa MW: 90798 Da PI: 8.0272

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G032019.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.9	6.4e-27	61	146	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++++gkw+++++++eHnH+l HL.SW.v1.0.G032019.1 61 FYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRKQNGKWYIYSFVKEHNHDLL 145 **************************************999877....9**********************************97 PP FAR1 91 p 91 p HL.SW.v1.0.G032019.1 146 P 146 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-24	61	146	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.9E-26	260	351	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.742	539	575	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.0E-8	541	573	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-6	550	577	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence Send to blast
MEHMKRCRLI SSSVGVQVQG GCKVDLNIPT MSMDSNVIIA SPVVEPHDGI EFESHEDAYT 60 FYKEYAKSVG FGTAKLSSRR SRASKEFIDA KFSCIRYGNK QQSDDAINPR PSPKIGCKAS 120 MHVKRKQNGK WYIYSFVKEH NHDLLPDQAH FFRSHRNADP LKNDVRIRRR KNLATVSKLF 180 SAYQNVECLE RYLRNQHDIG RNLILESGDA EMLLEHFMQM QGENPKFFYA VDLNEEHRLR 240 NVFWVDAKGM EDYSKFNDAI SFDITYFSNK YKIPLVLFIG VNHHTQPTLL GCALIADETV 300 YTFVWLMQTW FIAMGEQAPR VILTDQNNAI KAAVAAVFPG TRHCFCLSYV MEKVPRQLEF 360 LGMWHDSFME KFNKCIFKSW SEEQFDKRWW KLIDKFNLRQ VDWIQSLYED RMYWVPTFVR 420 DISFAGLSTT SRLESLNSSF DKYVQRETSL RDFMERYREI LEDRYEEEAK ANFDAWHETP 480 ELKSPSPFEK QMSLVYTHEI FKKFQVEVLG AAACHLKKEN EDETSTTYSV KDFEDNQNYV 540 VKWNESKSDI YCLCQSFEYK GYLCRHAIVV LQMSGVFSIP PKYVLQRWTN AAMSRHSIGE 600 KLDNVQRKVR RYNDLCRRAI ILGEEGSLSE QSYNTALSAI KEALKQCASL NNSLENNARP 660 DTSAVSGVCT VDAENQCSNA SNFEVSNPKV TPANRASGRA GAGKEAASKK GKVHQTEAAS 720 VGTQGGFHQM ELSGPNMMQQ LQNVVPAHIH NMNLVPPPAM FQNVSSAAAA AQFHNMAAAS 780 TAHLHHNPRL PR*

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence Send to blast

MEHMKRCRLI SSSVGVQVQG GCKVDLNIPT MSMDSNVIIA SPVVEPHDGI EFESHEDAYT  60
FYKEYAKSVG FGTAKLSSRR SRASKEFIDA KFSCIRYGNK QQSDDAINPR PSPKIGCKAS  120
MHVKRKQNGK WYIYSFVKEH NHDLLPDQAH FFRSHRNADP LKNDVRIRRR KNLATVSKLF  180
SAYQNVECLE RYLRNQHDIG RNLILESGDA EMLLEHFMQM QGENPKFFYA VDLNEEHRLR  240
NVFWVDAKGM EDYSKFNDAI SFDITYFSNK YKIPLVLFIG VNHHTQPTLL GCALIADETV  300
YTFVWLMQTW FIAMGEQAPR VILTDQNNAI KAAVAAVFPG TRHCFCLSYV MEKVPRQLEF  360
LGMWHDSFME KFNKCIFKSW SEEQFDKRWW KLIDKFNLRQ VDWIQSLYED RMYWVPTFVR  420
DISFAGLSTT SRLESLNSSF DKYVQRETSL RDFMERYREI LEDRYEEEAK ANFDAWHETP  480
ELKSPSPFEK QMSLVYTHEI FKKFQVEVLG AAACHLKKEN EDETSTTYSV KDFEDNQNYV  540
VKWNESKSDI YCLCQSFEYK GYLCRHAIVV LQMSGVFSIP PKYVLQRWTN AAMSRHSIGE  600
KLDNVQRKVR RYNDLCRRAI ILGEEGSLSE QSYNTALSAI KEALKQCASL NNSLENNARP  660
DTSAVSGVCT VDAENQCSNA SNFEVSNPKV TPANRASGRA GAGKEAASKK GKVHQTEAAS  720
VGTQGGFHQM ELSGPNMMQQ LQNVVPAHIH NMNLVPPPAM FQNVSSAAAA AQFHNMAAAS  780
TAHLHHNPRL PR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010087462.1	0.0	protein FAR1-RELATED SEQUENCE 4
Refseq	XP_024021010.1	0.0	protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	W9QKD5	0.0	W9QKD5_9ROSA; Protein FAR1-RELATED SEQUENCE 4
STRING	XP_010087462.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]