PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G031966.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 407aa MW: 47390 Da PI: 8.3981

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G031966.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.3	2.5e-08	18	61	48	90
FAR1 48 tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + +++ +++ tr+gC +l+v+++k ++ w+v ++e eHnH+la HL.SW.v1.0.G031966.1 18 KLEKKIPKPLTRVGCPERLRVNLDKsTNLWVVRDFEPEHNHNLA 61 56788899**************999************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-5	18	61	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.3E-30	183	277	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MGLLKGWNAK REVDKFGKLE KKIPKPLTRV GCPERLRVNL DKSTNLWVVR DFEPEHNHNL 60 ALPHEIQFLR SNKKVTQAIG QPIMSMRRSG IRTCYIMNHL AQERGGQDYV PFQKRDLYNW 120 IGRNGRPTEI EINSEGALGY LECLAKRDIE FYGIYSTDNN TRLANLFWCD GVSRQYYQTF 180 GDVLAFDTTY KTNAYNKPLL MFVGVNHHFR TIMFGCALLC DESASTFVWV LQCFLNVMNN 240 KHPKVVVTDG DKAMREAIIK VMPNTVHRLC GWRLSTNASA NCTNPSFMQA FNHLMYHYFM 300 DEQEWEDQWK SVIEGFQLED NGWMKTQYKR KTNWAETFLR GNFVDGLRTT QRCESTNSYL 360 NQFLTSNLWL SDFIGQIDAA LQTLRHQEMQ DDFRSNHTSP QLLNHV*

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MGLLKGWNAK REVDKFGKLE KKIPKPLTRV GCPERLRVNL DKSTNLWVVR DFEPEHNHNL  60
ALPHEIQFLR SNKKVTQAIG QPIMSMRRSG IRTCYIMNHL AQERGGQDYV PFQKRDLYNW  120
IGRNGRPTEI EINSEGALGY LECLAKRDIE FYGIYSTDNN TRLANLFWCD GVSRQYYQTF  180
GDVLAFDTTY KTNAYNKPLL MFVGVNHHFR TIMFGCALLC DESASTFVWV LQCFLNVMNN  240
KHPKVVVTDG DKAMREAIIK VMPNTVHRLC GWRLSTNASA NCTNPSFMQA FNHLMYHYFM  300
DEQEWEDQWK SVIEGFQLED NGWMKTQYKR KTNWAETFLR GNFVDGLRTT QRCESTNSYL  360
NQFLTSNLWL SDFIGQIDAA LQTLRHQEMQ DDFRSNHTSP QLLNHV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3265	7	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-66	FAR1-related sequence 5