PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G031934.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 471aa    MW: 51579.5 Da    PI: 8.6066
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G031934.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-30286344259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp ++++tY+ eHnh+
  HL.SW.v1.0.G031934.1 286 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRTDPGMFIVTYTAEHNHP 344
                           79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-30275346IPR003657WRKY domain
PROSITE profilePS5081134.808280346IPR003657WRKY domain
SuperFamilySSF1182901.02E-25283346IPR003657WRKY domain
SMARTSM007742.6E-36285345IPR003657WRKY domain
PfamPF031063.5E-25287344IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MPTPPISLSK KAHLCLSLSF SQLFFFYLFI FCVNLLFLSI YTCCYILFLS HSFASLSFSF  60
IKSQRLLLSF SLSLSVLRAR ARDNTGYRAC RSTTMEVDWD LQAVVRGCST AGAGVRASTT  120
TTATSTTSSP VFMADFQTTA ASSSSFLFSS SSSPFGSTSC NSSSISEHQS SGQLFLLPDP  180
NSMRPRNFVV EELHELYKPF FPKSHTQIQT PLSSLSSICS STSTSTTIRS NDQIRQVKQV  240
HHQHQHQHQP TTKQSHNNGS TTTPRSKKRK NQVKKVCQVP AESLSSDIWA WRKYGQKPIK  300
GSPYPRGYYR CSSSKGCLAR KQVERNRTDP GMFIVTYTAE HNHPAPTHRN SLAGSTRQKP  360
STPQSISGTS DFNNPATKTS SPATSGEEEV FVPQTHSTTT ESKDGPESVL MDDDDEDEFG  420
LSDVAMSDDF FVGLEGLGSP TTGEFFSDNF PTSFSLPWVA NSAATAAGGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-23270347280Disease resistance protein RRS1
5w3x_D5e-23270347280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092573.11e-149WRKY transcription factor 22
TrEMBLA0A2P5F0361e-167A0A2P5F036_TREOI; WRKY domain containing protein
STRINGXP_010092573.11e-148(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.18e-78WRKY family protein