PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G031875.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 565aa    MW: 63266.4 Da    PI: 4.839
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G031875.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.92.9e-51141411127
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           lp GfrF+Ptdeel+++yL+ k++gk+ ++ +vi+e+d++k+ePwd+p  +++ +++ ew+fF+++d+ky++g+r nrat++gyWkatg
  HL.SW.v1.0.G031875.1  14 LPLGFRFRPTDEELIDFYLRLKINGKDEQV-SVIREIDVCKLEPWDMPdlSMIPTRDPEWFFFCPQDRKYPNGNRLNRATNAGYWKATG 101
                           699************************999.99**************96447778999******************************* PP

                   NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                           kd+ + s +++++g+kktLvfy+grapkg++t+Wvmheyr
  HL.SW.v1.0.G031875.1 102 KDRFIRSGGKTEIGMKKTLVFYTGRAPKGKRTNWVMHEYR 141
                           *******99999***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5810165IPR003441NAC domain
PROSITE profilePS5100555.91214165IPR003441NAC domain
PfamPF023653.6E-2715141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MAVGEMNVSS LNTLPLGFRF RPTDEELIDF YLRLKINGKD EQVSVIREID VCKLEPWDMP  60
DLSMIPTRDP EWFFFCPQDR KYPNGNRLNR ATNAGYWKAT GKDRFIRSGG KTEIGMKKTL  120
VFYTGRAPKG KRTNWVMHEY RPTLKELDGT NPGQNPFVIC RLFKKQDESV EGYKCEDAEP  180
AVSSPNAAQY STPDTQSDLA LSPEPLPSVE QASKPSIRVE CPMVKTPDEI ASEATMAEDQ  240
VKEETISEDE MRLRQDLSMF YVPPLEPVLD GTIYSPLHLQ MQSELGSSCQ YYSGTADRQY  300
GTNESDEVSQ LLKSHMQSEL GSSWGYNSAS GDCQSVANKL DDVMDSLMQS ERGPSWAFSS  360
VACSVDDVGQ HGTNEQDDIS QFLNSVFNDF EEEVSQNLDT ARDVHTSSVI SDEDDVSHCK  420
AYSEVAESGA DFQDPTKPIV SNDAGIRIRS RSLRRQNPMN TNEIMAGHGS APRRLRLQRR  480
LQKSCSFKTS SKPEEEPNAA VNEEKAVEQH ANNPEKPLER GTSRGYYGTV KTRSFPTQDT  540
GKKVLKTSLG GSNRLFSVMF RMNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-4611694169NO APICAL MERISTEM PROTEIN
1ut4_B3e-4611694169NO APICAL MERISTEM PROTEIN
1ut7_A3e-4611694169NO APICAL MERISTEM PROTEIN
1ut7_B3e-4611694169NO APICAL MERISTEM PROTEIN
4dul_A3e-4611694169NAC domain-containing protein 19
4dul_B3e-4611694169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103069.11e-167protein NTM1-like 9
TrEMBLA0A2P5EDU20.0A0A2P5EDU2_TREOI; NAC domain containing protein
STRINGXP_010103069.11e-166(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.22e-92TCV-interacting protein