PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G031875.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NAC | ||||||||
Protein Properties | Length: 565aa MW: 63266.4 Da PI: 4.839 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.9 | 2.9e-51 | 14 | 141 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lp GfrF+Ptdeel+++yL+ k++gk+ ++ +vi+e+d++k+ePwd+p +++ +++ ew+fF+++d+ky++g+r nrat++gyWkatg HL.SW.v1.0.G031875.1 14 LPLGFRFRPTDEELIDFYLRLKINGKDEQV-SVIREIDVCKLEPWDMPdlSMIPTRDPEWFFFCPQDRKYPNGNRLNRATNAGYWKATG 101 699************************999.99**************96447778999******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 kd+ + s +++++g+kktLvfy+grapkg++t+Wvmheyr HL.SW.v1.0.G031875.1 102 KDRFIRSGGKTEIGMKKTLVFYTGRAPKGKRTNWVMHEYR 141 *******99999***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-58 | 10 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.912 | 14 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-27 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002230 | Biological Process | positive regulation of defense response to virus by host | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MAVGEMNVSS LNTLPLGFRF RPTDEELIDF YLRLKINGKD EQVSVIREID VCKLEPWDMP 60 DLSMIPTRDP EWFFFCPQDR KYPNGNRLNR ATNAGYWKAT GKDRFIRSGG KTEIGMKKTL 120 VFYTGRAPKG KRTNWVMHEY RPTLKELDGT NPGQNPFVIC RLFKKQDESV EGYKCEDAEP 180 AVSSPNAAQY STPDTQSDLA LSPEPLPSVE QASKPSIRVE CPMVKTPDEI ASEATMAEDQ 240 VKEETISEDE MRLRQDLSMF YVPPLEPVLD GTIYSPLHLQ MQSELGSSCQ YYSGTADRQY 300 GTNESDEVSQ LLKSHMQSEL GSSWGYNSAS GDCQSVANKL DDVMDSLMQS ERGPSWAFSS 360 VACSVDDVGQ HGTNEQDDIS QFLNSVFNDF EEEVSQNLDT ARDVHTSSVI SDEDDVSHCK 420 AYSEVAESGA DFQDPTKPIV SNDAGIRIRS RSLRRQNPMN TNEIMAGHGS APRRLRLQRR 480 LQKSCSFKTS SKPEEEPNAA VNEEKAVEQH ANNPEKPLER GTSRGYYGTV KTRSFPTQDT 540 GKKVLKTSLG GSNRLFSVMF RMNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-46 | 1 | 169 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-46 | 1 | 169 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-46 | 1 | 169 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-46 | 1 | 169 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-46 | 1 | 169 | 4 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-46 | 1 | 169 | 4 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010103069.1 | 1e-167 | protein NTM1-like 9 | ||||
TrEMBL | A0A2P5EDU2 | 0.0 | A0A2P5EDU2_TREOI; NAC domain containing protein | ||||
STRING | XP_010103069.1 | 1e-166 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5551 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24590.2 | 2e-92 | TCV-interacting protein |