PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G031512.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

SBP

Protein Properties

Length: 930aa MW: 104207 Da PI: 7.1884

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G031512.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129	1.8e-40	103	180	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adl++ak+yhrrhkvC++hska+++l+s+++qrfCqqCsrfh l+efD++krsCrrrLa+hn+rrrk+++ HL.SW.v1.0.G031512.1 103 ICQVEDCTADLTNAKDYHRRHKVCDIHSKATEALISNTMQRFCQQCSRFHLLQEFDQGKRSCRRRLAGHNRRRRKTHP 180 5**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	31.693	101	178	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	3.0E-31	102	165	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.23E-37	103	182	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-28	104	177	IPR004333	Transcription factor, SBP-box
CDD	cd00204	8.90E-7	710	812	No hit	No description
SuperFamily	SSF48403	3.58E-7	711	813	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.3E-6	711	819	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	8.906	753	825	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence Send to blast
MEAKFGGNKR SLEWDLNDWR WDGDLFNATP SLNSLPSAHL SKTWPSFSED SHNHNHERAL 60 LVNEEESNQE ATAAAASLNL KLGIAESEGN KLKTAGTTSC GIICQVEDCT ADLTNAKDYH 120 RRHKVCDIHS KATEALISNT MQRFCQQCSR FHLLQEFDQG KRSCRRRLAG HNRRRRKTHP 180 DNTLPDEKNT NYLLLSLLRI LSNMHFDGRR NMSAVLQDSQ GLINAGTSVE ASLKPMEMIS 240 DTLFGSASKV GDNPISLVAP SKCVRECNKV SVSDMALKKV CAVDANGGSM QTLSGLGSIN 300 PLCSIDNLSA KSIKLNMAVG PIKPNNIDLN IVYDDSHLPV NSETDSLDNP LCIQHDNLHK 360 PSSSHPSQNS DSTSTRSPSS SSGEIQSRTD RIVFKLFGKE PEDLPFLLRT QILNWLSLCP 420 TDIESYIRPG CVILTIYLHL EKITWEELHC DLGSSLKRLL AASNDPFWRT GWVYSRVQNS 480 VAFMHNGQLV LDTPLPQKSY KNCRISSIKP VAVALSERAQ FEVKGFNLFH PSMRLLCALD 540 GKYLVQEICN GLMDNTTGTT LEHDEIQCLR FSCSIPTVTG RGFIEVEDYG FSSSFFPFIV 600 AEQEVCSEIC MLQGAIEVEK TVGDADKARN QALDFVHEMG WLLHRSQAKL RLGPMDPNSD 660 LFPFKRFKWL MEFSMDHDWC FVVKKLLCIL FEGIVDAGEH SSIEVAILDM SLLHRAVQRN 720 SRPMVDNLLK FVIPQKIMNK PQVLFKADHV GAMGLTPLHV AANQGGCDGV LDALTDDTGK 780 VGIEVWKNAR DETGLTPNDY ACLRGHYSYI HLVQRKMSQV PSSESGHVAV DILDDDSSSS 840 TNTNNQQKQR WKGGNMEIDK NEMKEYCRRW HWHRQRQQKR SSLVYKPAMI CLVGIAAVCV 900 CVALLFKSSP EVLYVFKPFR WERLKYGSC*

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence Send to blast

MEAKFGGNKR SLEWDLNDWR WDGDLFNATP SLNSLPSAHL SKTWPSFSED SHNHNHERAL  60
LVNEEESNQE ATAAAASLNL KLGIAESEGN KLKTAGTTSC GIICQVEDCT ADLTNAKDYH  120
RRHKVCDIHS KATEALISNT MQRFCQQCSR FHLLQEFDQG KRSCRRRLAG HNRRRRKTHP  180
DNTLPDEKNT NYLLLSLLRI LSNMHFDGRR NMSAVLQDSQ GLINAGTSVE ASLKPMEMIS  240
DTLFGSASKV GDNPISLVAP SKCVRECNKV SVSDMALKKV CAVDANGGSM QTLSGLGSIN  300
PLCSIDNLSA KSIKLNMAVG PIKPNNIDLN IVYDDSHLPV NSETDSLDNP LCIQHDNLHK  360
PSSSHPSQNS DSTSTRSPSS SSGEIQSRTD RIVFKLFGKE PEDLPFLLRT QILNWLSLCP  420
TDIESYIRPG CVILTIYLHL EKITWEELHC DLGSSLKRLL AASNDPFWRT GWVYSRVQNS  480
VAFMHNGQLV LDTPLPQKSY KNCRISSIKP VAVALSERAQ FEVKGFNLFH PSMRLLCALD  540
GKYLVQEICN GLMDNTTGTT LEHDEIQCLR FSCSIPTVTG RGFIEVEDYG FSSSFFPFIV  600
AEQEVCSEIC MLQGAIEVEK TVGDADKARN QALDFVHEMG WLLHRSQAKL RLGPMDPNSD  660
LFPFKRFKWL MEFSMDHDWC FVVKKLLCIL FEGIVDAGEH SSIEVAILDM SLLHRAVQRN  720
SRPMVDNLLK FVIPQKIMNK PQVLFKADHV GAMGLTPLHV AANQGGCDGV LDALTDDTGK  780
VGIEVWKNAR DETGLTPNDY ACLRGHYSYI HLVQRKMSQV PSSESGHVAV DILDDDSSSS  840
TNTNNQQKQR WKGGNMEIDK NEMKEYCRRW HWHRQRQQKR SSLVYKPAMI CLVGIAAVCV  900
CVALLFKSSP EVLYVFKPFR WERLKYGSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-31	103	177	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010099719.1	0.0	squamosa promoter-binding-like protein 12 isoform X1
TrEMBL	W9RIZ1	0.0	W9RIZ1_9ROSA; Squamosa promoter-binding-like protein 12
STRING	XP_010099719.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1