PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G030971.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 291aa    MW: 33428.4 Da    PI: 6.3895
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G030971.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-17115165255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y GVr+++ +g+++AeIrd + ng   r++lg+f++ae Aa a+++a+ +++g
  HL.SW.v1.0.G030971.1 115 SYIGVRRRP-WGKFAAEIRDSTRNG--HRVWLGTFDSAESAALAYDQAAFSMRG 165
                           599******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.076115173IPR001471AP2/ERF domain
PfamPF008473.7E-13115165IPR001471AP2/ERF domain
SMARTSM003801.4E-33115179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-28115174IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-21115174IPR016177DNA-binding domain
PRINTSPR003671.6E-8116127IPR001471AP2/ERF domain
CDDcd000188.35E-27116174No hitNo description
PRINTSPR003671.6E-8139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDFSDFFDLD QNLEFITRSF SRGVEDHDHD HPHNQFTNQD QSSLFSFDDI QSSQKESPPP  60
LPHPHQDQQS PETLISSTTA LDHDDDEEEE QNSHHNQKKR NSSSSSSSSK SKEKSYIGVR  120
RRPWGKFAAE IRDSTRNGHR VWLGTFDSAE SAALAYDQAA FSMRGLAAVL NFPIEKVQKS  180
LQDIRFYDFN FNFGRSPAEA LKERHYNMRK KVSKTYLKNN NKATKDHHLL HHHHHHQEQH  240
HLKMSSSTNS DSTDMQLLVF EDLGPEYLEQ LLESSSSSTS NPSKLVLDYI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-27111174164ATERF1
3gcc_A2e-27111174164ATERF1
5wx9_A3e-271161731572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111913.12e-51ethylene-responsive transcription factor 1B
TrEMBLA0A2P5CNJ44e-85A0A2P5CNJ4_PARAD; AP2/ERF transcription factor
STRINGXP_010111913.16e-51(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.18e-41ethylene response factor 1