PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G030891.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

LBD

Protein Properties

Length: 209aa MW: 23421.2 Da PI: 7.3325

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G030891.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.2	9.5e-46	23	122	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ HL.SW.v1.0.G030891.1 23 PCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEDQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDA 111 7************************************************************************************** PP DUF260 90 lkaelallkee 100 l+++lal+++e HL.SW.v1.0.G030891.1 112 LQTQLALAQAE 122 ****99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.239	22	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-45	23	120	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MGSYLEIYII MKESGRKQGA MSPCAACKLL RRRCAQDCVF APYFPADEPQ KFASVHKVFG 60 ASNVNKMLQE LPEDQRSDAV SSMVYEANAR VRDPVYGCVG AISSLQQQID ALQTQLALAQ 120 AEVVHMRMSQ FSPTPNHNNN PHQSTDSITT HHHHHPSTDQ NNNNNKHHIM SNTTSHHHHL 180 HHQTKSFFSL DMAVDHHQAN MGESLWSC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-49	19	136	7	124	LOB family transfactor Ramosa2.1
5ly0_B	1e-49	19	136	7	124	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007212145.1	1e-95	LOB domain-containing protein 4
Refseq	XP_008226099.1	1e-95	PREDICTED: LOB domain-containing protein 4
Refseq	XP_021828556.1	1e-95	LOB domain-containing protein 4-like
Swissprot	Q9SHE9	2e-68	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2P5CCR0	1e-99	A0A2P5CCR0_TREOI; Lateral organ boundaries domain containing protein
STRING	XP_008226099.1	4e-95	(Prunus mume)
STRING	EMJ13344	4e-95	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	8e-64	LOB domain-containing protein 4