PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G030866.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 384aa    MW: 41644.2 Da    PI: 4.5274
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G030866.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.87.4e-14213249135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  HL.SW.v1.0.G030866.1 213 CQHCGISEkcTPAMRRGPGGPRSLCNACGLMWANKGT 249
                           **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.1E-775110IPR010399Tify domain
PROSITE profilePS5132013.24775110IPR010399Tify domain
PfamPF062004.8E-1078109IPR010399Tify domain
PfamPF062037.9E-15143185IPR010402CCT domain
PROSITE profilePS5101712.451143185IPR010402CCT domain
SMARTSM004012.1E-10207260IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-13211254IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-11211264No hitNo description
CDDcd002025.83E-14212255No hitNo description
PfamPF003208.0E-12213249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440213240IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MDTVNPQPLQ ARPFVAEEGG QIVQFTVPGE SNEVGFDVAV GGGGGGGRID SMNGGVGIGD  60
APRDFAMAAY RNSAMPSRTS ELTIAFEGEV YVFPAVTPEK VQAVLLLLGG CDVPSCAPSS  120
EFIVEKNSRV TSDLTRSSKI SRRIASLVRF REKRKERCFE KKILYSCRKE VAQRMHRKNG  180
QFASSKESSC KTDVGNWDSS DGTPCAESVL RRCQHCGISE KCTPAMRRGP GGPRSLCNAC  240
GLMWANKGTL RDLSKSGRAV TFYQNETETT ADIKPLAVEA ENSYHEQDDQ GSPDEIKPVS  300
LDSENPSLRL SDQDLQDMRE IQGTNAEGVT DHVSIQVENS SVELDEQEAL DEFANTSGPE  360
FDIPENFDDQ ISVFSSLTSN MGD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031736.10.0GATA transcription factor 24
TrEMBLA0A2P5FKM10.0A0A2P5FKM1_TREOI; GATA transcription factor
STRINGXP_008237241.11e-146(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.27e-52ZIM-like 1