PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 62aa MW: 7445.62 Da PI: 7.5185

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G030667.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.2e-09	1	36	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++f+ Lrel+P++ ++K +Ka+ L + +eY+++Lq HL.SW.v1.0.G030667.1 1 MKKKFQILRELIPQS----DQKRDKASFLLELIEYVQYLQ 36 6899********9....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.722	1	35	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-11	1	57	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-14	1	56	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.50E-6	1	39	No hit	No description
Pfam	PF00010	1.7E-6	1	36	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
MKKKFQILRE LIPQSDQKRD KASFLLELIE YVQYLQEKIN MYEESYQGWS SEPAKLHPWV 60 I*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002278322.2	3e-27	PREDICTED: transcription factor BIM2
Refseq	XP_011653408.1	8e-28	PREDICTED: transcription factor BIM3 isoform X3
Swissprot	Q9CAA4	4e-24	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A2P5B2D2	2e-26	A0A2P5B2D2_PARAD; Basic helix-loop-helix transcription factor
TrEMBL	A0A2P5E9A7	2e-26	A0A2P5E9A7_TREOI; Basic helix-loop-helix transcription factor
STRING	VIT_14s0083g00930.t01	3e-26	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-26	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]