PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G030315.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GRAS
Protein Properties Length: 453aa    MW: 50957.9 Da    PI: 6.3003
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G030315.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4654.1e-142274491374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lLl+cA++v+sg+le+a+ +L+++s+laspdgd+mqR+aayfteALa r+++s+++l kal++++     +see+ ++k+f+e++P
  HL.SW.v1.0.G030315.1  27 LIHLLLTCANHVASGSLENANIALEQISQLASPDGDTMQRIAAYFTEALADRILKSWPGLHKALNSTRMF--LVSEEILVRKVFFELFP 113
                           689*************************************************************888876..6**************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           +lk++++++NqaI ea+ege++vHiiD+ +s+++QW+aLlq L++R+egpp+lRiT+v++    +ke le++++rL + Ae+l++pf+f
  HL.SW.v1.0.G030315.1 114 FLKVAFVLTNQAITEAIEGEKMVHIIDLHASEPAQWVALLQVLSARTEGPPHLRITAVHQ----QKEVLEQMAHRLIDEAEKLDIPFQF 198
                           ************************************************************....9************************ PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll..................................................... 214
                           n+ v+++le+l++e+Lrvk+gEal+V++vlqlh+ll                                                     
  HL.SW.v1.0.G030315.1 199 NL-VVSKLENLDMEKLRVKTGEALVVSSVLQLHSLLasddellrkksplgpktlngtyfprafqvnqstlgellekdfvngcspspdsa 286
                           *9.799**********************************************************************************9 PP

                  GRAS 215 ...desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300
                                s++ + + d +L+++++l Pk++vv+eq+++hn+ +++er+leal+ y+alfd+le++++r+  er kvE++l+g+ei+n++ac
  HL.SW.v1.0.G030315.1 287 sswPLSLNASGKMDGFLNALWGLTPKLMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESTVSRTPLERLKVEKMLFGEEIKNIIAC 375
                           977333333446777************************************************************************** PP

                  GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                           eg er+erhe+l kW +rl++aGF +vpls++ ++qa++ll+ ++ dgy++ e++g ++++W+drpL+s+SaWr
  HL.SW.v1.0.G030315.1 376 EGPERKERHEKLDKWIQRLDSAGFANVPLSYYGMMQARRLLQGYGCDGYKIREDNGNVLICWQDRPLYSISAWR 449
                           *************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.9491429IPR005202Transcription factor GRAS
PfamPF035141.4E-13927449IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MMSLSPSLGS PYPWLKELKS EERGLYLIHL LLTCANHVAS GSLENANIAL EQISQLASPD  60
GDTMQRIAAY FTEALADRIL KSWPGLHKAL NSTRMFLVSE EILVRKVFFE LFPFLKVAFV  120
LTNQAITEAI EGEKMVHIID LHASEPAQWV ALLQVLSART EGPPHLRITA VHQQKEVLEQ  180
MAHRLIDEAE KLDIPFQFNL VVSKLENLDM EKLRVKTGEA LVVSSVLQLH SLLASDDELL  240
RKKSPLGPKT LNGTYFPRAF QVNQSTLGEL LEKDFVNGCS PSPDSASSWP LSLNASGKMD  300
GFLNALWGLT PKLMVVTEQD SNHNGLTLME RLLEALYSYA ALFDCLESTV SRTPLERLKV  360
EKMLFGEEIK NIIACEGPER KERHEKLDKW IQRLDSAGFA NVPLSYYGMM QARRLLQGYG  420
CDGYKIREDN GNVLICWQDR PLYSISAWRC RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-41114512380Protein SCARECROW
5b3h_D5e-41114512380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097452.20.0scarecrow-like protein 3 isoform X2
RefseqXP_024022054.10.0scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2P5FIP70.0A0A2P5FIP7_TREOI; GRAS transcription factor
STRINGXP_010097452.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]