PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G030114.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

MYB_related

Protein Properties

Length: 613aa MW: 64699.6 Da PI: 5.5247

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G030114.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.1	1.9e-08	200	244	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed+ l+ av++ G g+W+ I r Rt+ q+ rw HL.SW.v1.0.G030114.1 200 RKPWSEAEDLELIAAVQKCGEGNWANILRGDFkGDRTASQLSQRW 244 789************************984223588888888888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.653	195	252	IPR017930	Myb domain
SuperFamily	SSF46689	7.9E-12	197	249	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-12	197	249	IPR009057	Homeodomain-like
SMART	SM00717	7.2E-9	199	250	IPR001005	SANT/Myb domain
Pfam	PF00249	7.0E-7	200	244	IPR001005	SANT/Myb domain
CDD	cd11660	1.76E-13	201	249	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MVESSKKQTK GLISEEEIAT LLHRYSATTV LTLLHEVSNC SGFKIDWNAL AEKTSTGISN 60 ANEYQMLWRH LAYRQSLLET FEDGAGAQPM DDDSDLEYEL EAFPTISGEP LAEAAACVKV 120 LIASGSSSDS IPCGSTVEAP LTINIPNVQS SRALEQSSCS MQGTNITVPV LVQKQPVPSA 180 TIADQDMNGL AGGNLHRRKR KPWSEAEDLE LIAAVQKCGE GNWANILRGD FKGDRTASQL 240 SQRWAIIRKR HGNLNLGGHS NGTQLSEAQL AARHAVSLAL NMPVKGLAAG ATTTNNSAVT 300 NSINNSVGTN GTKNSLATGA SETLMGGCGF LQSQKQAQEH LTSKPSPVGS LGPTAKPRLP 360 LKKPVLKSSP SSDAMVRATA VAAGARIASP SDAASLLKAA QAKNAVHIMP SGIGSIKATS 420 GMSTLSEGHP NVHYILKAIP PAVQHTPTIN AQSDVSSKQK TDVSYTPPVC EVPSKQAVKT 480 EEITMSELGP SMKEQMQGDR ACISSNSMGE VVKENKVTSP DSKVGINGTS ESLVSAVNVT 540 SSLNDQVIAD IQPKNRESEK DIEMMSSVAG AGENDDVVEE DGENQNMDKM EEDPSVVKAD 600 ACSVKLETMQ RS*

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MVESSKKQTK GLISEEEIAT LLHRYSATTV LTLLHEVSNC SGFKIDWNAL AEKTSTGISN  60
ANEYQMLWRH LAYRQSLLET FEDGAGAQPM DDDSDLEYEL EAFPTISGEP LAEAAACVKV  120
LIASGSSSDS IPCGSTVEAP LTINIPNVQS SRALEQSSCS MQGTNITVPV LVQKQPVPSA  180
TIADQDMNGL AGGNLHRRKR KPWSEAEDLE LIAAVQKCGE GNWANILRGD FKGDRTASQL  240
SQRWAIIRKR HGNLNLGGHS NGTQLSEAQL AARHAVSLAL NMPVKGLAAG ATTTNNSAVT  300
NSINNSVGTN GTKNSLATGA SETLMGGCGF LQSQKQAQEH LTSKPSPVGS LGPTAKPRLP  360
LKKPVLKSSP SSDAMVRATA VAAGARIASP SDAASLLKAA QAKNAVHIMP SGIGSIKATS  420
GMSTLSEGHP NVHYILKAIP PAVQHTPTIN AQSDVSSKQK TDVSYTPPVC EVPSKQAVKT  480
EEITMSELGP SMKEQMQGDR ACISSNSMGE VVKENKVTSP DSKVGINGTS ESLVSAVNVT  540
SSLNDQVIAD IQPKNRESEK DIEMMSSVAG AGENDDVVEE DGENQNMDKM EEDPSVVKAD  600
ACSVKLETMQ RS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010086659.1	0.0	uncharacterized protein LOC21386454 isoform X2
TrEMBL	A0A2P5F1D7	0.0	A0A2P5F1D7_TREOI; GAMYB transcription factor
STRING	XP_010086659.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3122	32	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	5e-79	MYB_related family protein