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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
HL.SW.v1.0.G029910.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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| Family |
GRAS |
| Protein Properties |
Length: 237aa MW: 26387.2 Da PI: 7.1805 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G029910.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 277.1 | 5.4e-85 | 1 | 235 | 129 | 374 |
GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217
+qaL++R++g+p lRiTgvgs s ++++etg+ L+++A++l+vpfef++ v ++ledl++++++ + gEalaVn+v +lhr++
HL.SW.v1.0.G029910.1 1 MQALSARSGGSPFLRITGVGS----SLDSVRETGRCLTELAHSLQVPFEFHA-VGEQLEDLKPHMFQRRVGEALAVNSVNRLHRVP--- 81
9********************....9**************************.7*******************************9... PP
GRAS 218 vsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
++ ++L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kvE+ ++++ei+n+va eg er+
HL.SW.v1.0.G029910.1 82 GNFL---GNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPAESAQRAKVEQYIFAPEIRNIVAFEGPERI 167
4443...47******************************************************************************** PP
GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
erhe+l kWr+ +e GFk vpls +a++q k ll ++ +gyr+ e++g+l+lgW+drpL+++SaWr
HL.SW.v1.0.G029910.1 168 ERHERLDKWRKLMEGKGFKGVPLSANAVTQSKILLGLYSCEGYRLTEDNGCLLLGWMDRPLIAASAWR 235
*******************************************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 237 aa
Download sequence Send
to blast |
MQALSARSGG SPFLRITGVG SSLDSVRETG RCLTELAHSL QVPFEFHAVG EQLEDLKPHM 60
FQRRVGEALA VNSVNRLHRV PGNFLGNLLA MIRDQAPNIV TLVEQEASHN GPYFLGRFLE 120
ALHYYSAIFD SLDATFPAES AQRAKVEQYI FAPEIRNIVA FEGPERIERH ERLDKWRKLM 180
EGKGFKGVPL SANAVTQSKI LLGLYSCEGY RLTEDNGCLL LGWMDRPLIA ASAWRC*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
