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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G029775.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | C3H | ||||||||
Protein Properties | Length: 438aa MW: 47771.9 Da PI: 8.3664 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.9 | 5.4e-11 | 53 | 78 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C+++ rtG C++G++C+F+H+p HL.SW.v1.0.G029775.1 53 GEQDCSYYIRTGLCRFGATCRFNHPP 78 6789********************97 PP | |||||||
2 | zf-CCCH | 31.7 | 2.6e-10 | 97 | 117 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++f++tGtCk+G++CkF+H++ HL.SW.v1.0.G029775.1 97 QYFLKTGTCKFGATCKFHHPR 117 59*****************96 PP | |||||||
3 | zf-CCCH | 35.6 | 1.6e-11 | 139 | 162 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C +++rtG+Ck+G++CkF+H+ HL.SW.v1.0.G029775.1 139 ETECAYYLRTGQCKFGSTCKFHHP 162 578********************8 PP | |||||||
4 | zf-CCCH | 38.6 | 1.7e-12 | 297 | 323 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ HL.SW.v1.0.G029775.1 297 PGQPECQFYMKTGDCKFGAVCKFHHPR 323 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.1 | 5.9e-13 | 343 | 369 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ HL.SW.v1.0.G029775.1 343 PGEPLCIFYSRYGICKFGPSCKFDHPM 369 589**********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.333 | 51 | 79 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-5 | 51 | 78 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-7 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 54 | 79 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.4E-4 | 57 | 77 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.024 | 94 | 117 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.0E-8 | 97 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.775 | 97 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 98 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.169 | 136 | 164 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-5 | 136 | 163 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 137 | 164 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-9 | 139 | 162 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-4 | 142 | 161 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.502 | 296 | 324 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-6 | 296 | 323 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-9 | 298 | 323 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-6 | 300 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.3E-5 | 302 | 324 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 342 | 370 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-7 | 342 | 369 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-10 | 344 | 369 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-5 | 345 | 369 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.2E-4 | 347 | 367 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MEFDGGIIPM SHLAPVTEAA PSLSPSFSED AMWQMNLRSS ETMESGTYPE RPGEQDCSYY 60 IRTGLCRFGA TCRFNHPPNR KLAIATARMK GEFPERQYFL KTGTCKFGAT CKFHHPRDKA 120 GIAGRVSLNM LGYPLRPNET ECAYYLRTGQ CKFGSTCKFH HPSPTNMMVS MRGSPVYPTV 180 QSPTTPGQQS YLGGITNWSR ASFIPSPRWQ GSSSYAPLIV PQGMVSVPGW NTYSGQLGSV 240 SSPDNQPAAG NSQMYGTSRQ SDQANTGSQG TYSPYRSGSV PVGFYALPRE NVFPERPGQP 300 ECQFYMKTGD CKFGAVCKFH HPRERLIPAP DCVLSPMGLP LRPGEPLCIF YSRYGICKFG 360 PSCKFDHPMG IFTYNLSASS SPDAPVLRLL GSSSGTAQLN FSSEGLAEAG STKARRLSLA 420 ETRQMPPGDD SNTDTED* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024030975.1 | 0.0 | zinc finger CCCH domain-containing protein ZFN-like isoform X2 | ||||
Swissprot | Q9SWF9 | 0.0 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A2P5B9Q7 | 0.0 | A0A2P5B9Q7_PARAD; Zinc finger, CCCH-type | ||||
STRING | XP_010111067.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5321 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 0.0 | zinc finger protein 1 |