PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G029164.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 915aa MW: 105311 Da PI: 7.3502

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G029164.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.2	1.6e-24	95	203	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkke 71 +fY+eYAk+vGF ++++s++s+ +g++++++f C+++g+++e+k + +++ r +r+ ++++Cka+++ k+ HL.SW.v1.0.G029164.1 95 SFYKEYAKSVGFAAVIKASRRSRVTGKFIDAKFACTRYGNKKESKLDetlegitntdgttmfptkRKRGRINRSWEKVDCKACMHAKRG 183 5****************************************99999**********988788888************** PP FAR1 72 kdgkwevtkleleHnHelap 91 +dgkw + ++ +eHnHe++p HL.SW.v1.0.G029164.1 184 QDGKWIICSFIKEHNHEIFP 203 ***************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.9E-22	95	203	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	8.4E-31	321	414	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.507	601	637	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.1E-6	602	634	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-4	612	639	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence Send to blast
MGIDLEQPSG DYHDEDYRKN VDTMDGSHEG VCRGPTHVNS HNLAINNKEN TGPIVDERTS 60 NNGNKQTGDE INFNSLKGLE PHDGMEFESK EEAFSFYKEY AKSVGFAAVI KASRRSRVTG 120 KFIDAKFACT RYGNKKESKL DETLEGITNT DGTTMFPTKR KRGRINRSWE KVDCKACMHA 180 KRGQDGKWII CSFIKEHNHE IFPDQAYYFR GHRNLDLDSS DADALNAIRA RTKRMCVAMS 240 RGSGGYKRTV CQKGESNQPQ GGQSLALDEG DAQIMLGHFI NMQDENPNFF YAIDLNEEQR 300 LRNVFWVDAK GRLDYSNFSD VILFDITYIK NEYKLPFAPF IGVNHHSQFL LLGSTLLADE 360 TKSTYVWLMR TWRRAMGGHA PKVILTDQDK ILKEAIAEVF PDTRHCFCLW HILNKIPEKL 420 SQVIKQHEKF MTKFKKCIFK SWTGEQFEKR WWKIVERYNL SGDLWFQSIY EDRERWVPTY 480 MKDIVLAGLS ATQRSESVNC FLDKYMQRKT TLKEFLEQYR VILVEKSEEE VKADFESWHK 540 QPALKSPSPF GKQMAGIYTH AIFKKFQVEV LGVVACHPKK EIEDRATKTF RVQDFEENQN 600 FVVQWNETTS DISCLCRSFE FNGFLCRHVM IVLQLSGVHS IPSQCILKRW TKDAKSRQSL 660 KEGSDLVESS VQRYNNICHR AFKLSDEGSL SQESYNIAFT ALEEALRKCE SVNNSIQTVL 720 EPSLPSCHGH PGFKEMSHSN RTNNENQKID TFKKGQMHSE PELISIGIHE GWQHMGHSNL 780 RAPAINCSFE SQESTQGMER LHERAPTLDG YFGTQEVVEG MNQLNPIAPR RDDYYSNQQN 840 VQGLGQLNSI APIHDTQYIT QQRMHSMGLH FRSQTVQRCF DVQDSIQDMD QSNFGSTQLQ 900 DLEPKHLHSK HLSR*

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence Send to blast

MGIDLEQPSG DYHDEDYRKN VDTMDGSHEG VCRGPTHVNS HNLAINNKEN TGPIVDERTS  60
NNGNKQTGDE INFNSLKGLE PHDGMEFESK EEAFSFYKEY AKSVGFAAVI KASRRSRVTG  120
KFIDAKFACT RYGNKKESKL DETLEGITNT DGTTMFPTKR KRGRINRSWE KVDCKACMHA  180
KRGQDGKWII CSFIKEHNHE IFPDQAYYFR GHRNLDLDSS DADALNAIRA RTKRMCVAMS  240
RGSGGYKRTV CQKGESNQPQ GGQSLALDEG DAQIMLGHFI NMQDENPNFF YAIDLNEEQR  300
LRNVFWVDAK GRLDYSNFSD VILFDITYIK NEYKLPFAPF IGVNHHSQFL LLGSTLLADE  360
TKSTYVWLMR TWRRAMGGHA PKVILTDQDK ILKEAIAEVF PDTRHCFCLW HILNKIPEKL  420
SQVIKQHEKF MTKFKKCIFK SWTGEQFEKR WWKIVERYNL SGDLWFQSIY EDRERWVPTY  480
MKDIVLAGLS ATQRSESVNC FLDKYMQRKT TLKEFLEQYR VILVEKSEEE VKADFESWHK  540
QPALKSPSPF GKQMAGIYTH AIFKKFQVEV LGVVACHPKK EIEDRATKTF RVQDFEENQN  600
FVVQWNETTS DISCLCRSFE FNGFLCRHVM IVLQLSGVHS IPSQCILKRW TKDAKSRQSL  660
KEGSDLVESS VQRYNNICHR AFKLSDEGSL SQESYNIAFT ALEEALRKCE SVNNSIQTVL  720
EPSLPSCHGH PGFKEMSHSN RTNNENQKID TFKKGQMHSE PELISIGIHE GWQHMGHSNL  780
RAPAINCSFE SQESTQGMER LHERAPTLDG YFGTQEVVEG MNQLNPIAPR RDDYYSNQQN  840
VQGLGQLNSI APIHDTQYIT QQRMHSMGLH FRSQTVQRCF DVQDSIQDMD QSNFGSTQLQ  900
DLEPKHLHSK HLSR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015894226.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	F6HF67	0.0	F6HF67_VITVI; Uncharacterized protein
STRING	VIT_01s0011g01470.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]