 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
HL.SW.v1.0.G028913.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
| Family |
MYB |
| Protein Properties |
Length: 301aa MW: 33277.2 Da PI: 8.1996 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| HL.SW.v1.0.G028913.1 | genome | HOPBASE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 45.4 | 1.9e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg+W++eEd l+++ + G+g +W + +++ g++R++k+c++rw++yl
HL.SW.v1.0.G028913.1 14 RGPWSPEEDAALKHYMHNNGTGgNWIALPHKAGLNRCGKSCRLRWLNYL 62
89*********************************************97 PP
|
| 2 | Myb_DNA-binding | 31.4 | 4.4e-10 | 70 | 147 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...................................-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...................................tWktIartmgkgRtlkqcksrwqk 46
+T+eEd + + G++ +W+ Ia+ ++ gRt++++k++w++
HL.SW.v1.0.G028913.1 70 GFTEEEDNVIWTLYSNIGSRqvqfffssclsnslsrsyiylcqafmnitmglvliRWSVIASQLP-GRTDNDVKNHWNT 147
589999999999999999999999999999999999999999999999999**************.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MGRAPCCDKT KVKRGPWSPE EDAALKHYMH NNGTGGNWIA LPHKAGLNRC GKSCRLRWLN 60
YLRPDIKHGG FTEEEDNVIW TLYSNIGSRQ VQFFFSSCLS NSLSRSYIYL CQAFMNITMG 120
LVLIRWSVIA SQLPGRTDND VKNHWNTKLK KKLLARSTSS NETTNTTDHL NLARFSPLIP 180
KTENSEQGNS AYCYTNSDTL PYLMNGNCVQ NFDLKKPSKP SYSSNPVQVS DFGTNGNTSS 240
SISSTREASS LSTSSSTLAM ENYTNFASWS GTGIESIEDG ILVDLGFDSS NDVFLSGFGF 300
*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AJ876882 | 0.0 | AJ876882.1 Humulus lupulus mRNA for Myb-like protein (myb1 gene), variety Osvald's 72. |
