PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028762.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 566aa    MW: 61301.3 Da    PI: 6.3219
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028762.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.41.7e-054504871254
                           HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  HL.SW.v1.0.G028762.1 450 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 487
                           677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-5448491No hitNo description
SuperFamilySSF474599.16E-10448492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-8452491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MAEEFQIQGG ICGGANWWNP SRSVFSAAAL PCSMGSFGWP NNINHDLLDI KMTRSSSSSG  60
EETTAHDHSC NNIFQDQVVD HHDHDHDHDH DHDQDQKSLH HLQTHNHISS VSGAGTGILI  120
DSTSLQMMGY GLSTSPTSDF TTNQPFVSRS SSNGRAERNN NFYSMLQQDH MASTKLNYRQ  180
EICSLDENDS SSQIQKDCWA SCTTTTTTSP PPKGFSSAGD DIMDSSATCT ATSQALSAGF  240
PVASSPFEYT SAALLQNLFE GETTSSTAAA TNQLPVHEQS FGNSINQLSV NINNNYSASS  300
VAADANNNSY MSSTNNIWPR FSPLILSSRP SAPLLKHQLA AAAAPPPPGL HFSNNTPFWN  360
ASSPVAGPND GVFPNSTQPQ LRYVTPKFEE KPSKCNNYVT KVNSNIEDVH HDSAGSISKK  420
SSNSTTGNDQ PVVKRPRIET PSPLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHEA  480
IEYIKFLHDQ VLSTPYMKNN GAAIQAHQQV GSNKLQKNQD ESSPKQDLKS RGLCLVPISS  540
TFPVANETTA DFWTPTSAFG GTFIR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030961.11e-132transcription factor bHLH112 isoform X3
TrEMBLA0A2P5BMX20.0A0A2P5BMX2_TREOI; Myc-type, basic helix-loop-helix (BHLH) domain containing protein
STRINGXP_010111014.11e-130(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.32e-51bHLH family protein