PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G028753.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

LBD

Protein Properties

Length: 203aa MW: 21901.6 Da PI: 8.2822

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G028753.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.1	9.5e-41	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+l+r+C++ C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+red+++sl+yeAear+rdPvyG++g i lq+++++ HL.SW.v1.0.G028753.1 12 SCAACKFLKRRCTPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMAE 100 6************************************************************************************** PP DUF260 90 lkaelallkee 100 l+++la ++++ HL.SW.v1.0.G028753.1 101 LQHDLAFARAR 111 ***998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.378	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-40	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MKGGHEPRAS SSCAACKFLK RRCTPTCIFA PYFRSDEPKK FAKVHKVFGA SNVSKILIEV 60 PEEQREDTVN SLAYEAEARL RDPVYGCIGA IALLQRKMAE LQHDLAFARA RLARFAAHSS 120 SSSSSSSSSY SSSSSSFSYG AILDGRLITE AAAFSGLPSA NCAGLSSGLI TTDHQALNSQ 180 SSFEFCQNNS VYHDFSFVPY IL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-48	7	116	6	115	LOB family transfactor Ramosa2.1
5ly0_B	2e-48	7	116	6	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024027330.1	2e-77	LOB domain-containing protein 21
Swissprot	Q9SRL8	2e-63	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A2P5EM60	1e-87	A0A2P5EM60_TREOI; Lateral organ boundaries domain containing protein
STRING	VIT_13s0067g01450.t01	5e-76	(Vitis vinifera)
STRING	cassava4.1_029097m	5e-76	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	4e-60	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]