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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G028600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB_related | ||||||||
Protein Properties | Length: 212aa MW: 23779.4 Da PI: 9.7433 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.7e-18 | 14 | 84 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT.........................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.........................tWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd++l++++k++G g W++Ia++++ gRt++++k++w+++ HL.SW.v1.0.G028600.1 14 KGAWTKEEDQRLIHYIKLHGEGcwrslpkaaepisertsllfsnqelKWSLIASRLP-GRTDNEIKNYWNTH 84 79*******************************************************.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-21 | 5 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.332 | 9 | 89 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-17 | 13 | 87 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.52E-13 | 14 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-8 | 14 | 42 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.74E-12 | 16 | 85 | No hit | No description |
Pfam | PF00249 | 4.5E-7 | 61 | 84 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MGRSPCCEKE HTNKGAWTKE EDQRLIHYIK LHGEGCWRSL PKAAEPISER TSLLFSNQEL 60 KWSLIASRLP GRTDNEIKNY WNTHIKRKLY SRGIDPQTHR PLLLVPTNKT TTSTTTISST 120 STSTPHLLST KTRTSTSSNS SSSSSDHDHH QNNKLIMFNN TMPNPKLHHH VTTIERTSSA 180 TAATTDQFYS NMTMAMSSTT SCTTSANNNS TD |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025012074.1 | 1e-56 | myb-related protein 308-like | ||||
Swissprot | Q38851 | 6e-50 | MYB6_ARATH; Transcription repressor MYB6 | ||||
TrEMBL | A0A2P5AGF6 | 6e-53 | A0A2P5AGF6_PARAD; MYB transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 7e-48 | myb domain protein 4 |