PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028599.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 324aa    MW: 35643.6 Da    PI: 9.6139
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028599.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd++l++++k++G g+W++ ++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G028599.1 14 KGAWTKEEDQRLIHYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                          79******************************99************97 PP
2Myb_DNA-binding60.24.3e-1967111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg++T+eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++
  HL.SW.v1.0.G028599.1  67 RGNFTEEEDELIINLHSLLGNK-WSLIASRLP-GRTDNEIKNYWNTH 111
                           89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129418.156961IPR017930Myb domain
SMARTSM007174.2E-141363IPR001005SANT/Myb domain
SuperFamilySSF466898.11E-3013108IPR009057Homeodomain-like
PfamPF002496.3E-161461IPR001005SANT/Myb domain
CDDcd001673.62E-111661No hitNo description
PROSITE profilePS5129429.23462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2865116IPR009057Homeodomain-like
SMARTSM007171.5E-1866114IPR001005SANT/Myb domain
PfamPF002492.1E-1767111IPR001005SANT/Myb domain
CDDcd001672.36E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDQRLIHYIK LHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIN LHSLLGNKWS LIASRLPGRT DNEIKNYWNT HIKRKLYSRG  120
IDPQTHRPLL LVPTNKTTTT TTTSSSTSTP HLLPTKTRTS TSSNSSSSSS DHDHNHQSNK  180
LIMFNNTMPN PKLHHHVTIE RTSSAIAAAA STDQFYSNMT MAMSSTTSCT TSANNNSTDV  240
ITSDTQRGLL NLDLSIGLQP LGLPSSSSTT TTTTTTTAKP VQPQIIHNKC NSFDHNKYNN  300
GSFDDPARAA AIASGGSSSS SSNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30141167108B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025012074.11e-95myb-related protein 308-like
SwissprotQ388516e-87MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A0L9UEB01e-93A0A0L9UEB0_PHAAN; Uncharacterized protein
STRINGXP_006426418.13e-94(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-83myb domain protein 4