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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G028514.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
NAC |
Protein Properties |
Length: 182aa MW: 21175.6 Da PI: 7.803 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G028514.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 163.5 | 8e-51 | 44 | 169 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
+pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+
HL.SW.v1.0.G028514.1 44 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADR 131
79***************************.89***************8778899*********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ +++++ +glkktLvfy+g+apkg +t+W+m+eyrl
HL.SW.v1.0.G028514.1 132 MIRTESSRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 169
************************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 182 aa
Download sequence Send
to blast |
MAIAATSSST TTASNNMSQE NESSNNVVNK ANDDDDDHEH DVVMPGFRFH PTEEELVEFY 60 LRRKVEGKRF NVELITFLDL YRYDPWELPA LAAIGEKEWF FYVPRDRKYR NGDRPNRVTT 120 SGYWKATGAD RMIRTESSRS IGLKKTLVFY SGKAPKGIRT SWIMNEYRLP QHETERYQKT 180 F*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-55 | 45 | 169 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-55 | 45 | 169 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-55 | 45 | 169 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-55 | 45 | 169 | 19 | 142 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-55 | 45 | 169 | 19 | 142 | NAC domain-containing protein 19 |
4dul_B | 3e-55 | 45 | 169 | 19 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |