PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028354.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 375aa    MW: 41374.4 Da    PI: 6.5151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028354.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12183228454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI +L
  HL.SW.v1.0.G028354.1 183 NHVEAERQRREKLNNRFYALRAVVPNV-----SRMDKASLLSDAVSYIDEL 228
                           799***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.2E-25183IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.837179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17179244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.01E-13182232No hitNo description
PfamPF000105.1E-10183228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-16183242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-15185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MSLSRSFFAG EGVPGKALSS GSLVWLTGGH ELQFYNCDRA NDAHLHGIET LVCIPTSCGV  60
LELGSSEIIR ENWGLVQQAK SLFGTDPNPI QFLRRNLSFA DIGITAGVRE EDETNNHSTK  120
ETTTLALMKT ARKEVLHGPN SIYPESDHSD SISDCPLVVA DVNKRLPKKR GRKPGLGRDT  180
PLNHVEAERQ RREKLNNRFY ALRAVVPNVS RMDKASLLSD AVSYIDELKT KINDLESQLV  240
QRDQTNNNHN KRVKIEMADN SLDNQSTTTS VDQTRPNNSN NSSGTPSADE DGGVGIELDV  300
KIVGTDAMIR VQSENENYPA ARLMGALREL EFQIHHASVS TINDLMLQDV VVKVADQRMR  360
NDHHALKAAI LARF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-28176258179Transcription factor MYC2
5gnj_B1e-28176258179Transcription factor MYC2
5gnj_E1e-28176258179Transcription factor MYC2
5gnj_F1e-28176258179Transcription factor MYC2
5gnj_G1e-28176258179Transcription factor MYC2
5gnj_I1e-28176258179Transcription factor MYC2
5gnj_M1e-28176258179Transcription factor MYC2
5gnj_N1e-28176258179Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100678.11e-168transcription factor MYC2
TrEMBLA0A2P5DQE10.0A0A2P5DQE1_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010100678.11e-167(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-57bHLH family protein