PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

GATA

Protein Properties

Length: 292aa MW: 31441.7 Da PI: 7.2487

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G028117.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.2	4.1e-17	209	245	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt++ Tp++Rrgp+g+++LCnaCGl++ +g+ HL.SW.v1.0.G028117.1 209 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWSNRGT 245 *********************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	15.049	75	110	IPR010399	Tify domain
SMART	SM00979	1.1E-12	75	110	IPR010399	Tify domain
Pfam	PF06200	1.6E-13	78	109	IPR010399	Tify domain
Pfam	PF06203	1.0E-15	142	184	IPR010402	CCT domain
PROSITE profile	PS51017	12.6	142	184	IPR010402	CCT domain
SuperFamily	SSF57716	3.99E-12	202	254	No hit	No description
PROSITE profile	PS50114	10.739	203	254	IPR000679	Zinc finger, GATA-type
SMART	SM00401	4.7E-14	203	256	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	7.0E-16	207	250	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	6.59E-15	208	259	No hit	No description
Pfam	PF00320	1.9E-14	209	245	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	209	236	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MYGHRQSMTI PSQIADDEDA SGVGGGAGSV DNPHLRYEAH ALDDPAGGVA GGGDVVEDIN 60 PDSVYGAGHE MVVHRSDGSS QLTLSFRGQV YVFDAVTPDK VQAVLLLLGG CEISAGAQGV 120 GMQSQNHRAM VDIPVRCSQP HRAASLNRFR QKRKERCFDK KVRYSVRQEV ALRMQRNKGQ 180 FTSKKTDGSY SWGNSQESGQ EDNSLQTSCT HCGTSSKSTP MMRRGPSGPR SLCNACGLFW 240 SNRGTLRELS KKTQDHSPTP VEQGEGEASD SNCETTIRTH SNLVSFCNGD T*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010099559.2	1e-165	GATA transcription factor 25
Swissprot	Q9LRH6	5e-91	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A2P5EWB2	1e-171	A0A2P5EWB2_TREOI; GATA transcription factor
STRING	XP_010099559.1	1e-160	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	1e-92	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]