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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G028104.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | EIL | ||||||||
Protein Properties | Length: 616aa MW: 69528 Da PI: 5.6465 | ||||||||
Description | EIL family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | EIN3 | 511.7 | 3.4e-156 | 41 | 425 | 1 | 354 |
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasd 89 +el++rmw+d+mll+rlke++k k+ ++++k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd HL.SW.v1.0.G028104.1 41 DELERRMWRDRMLLRRLKEQNKG----KQG-VDNAKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASD 124 79********************8....566.8999****************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S-- CS EIN3 90 sLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGke 178 +LraWWkekv+fdrngpaaiskyqa++ i+++++++++ s++h+l+elqDTtlgSLLsalmqhcdppqrrfplekg++pPWWP G+e HL.SW.v1.0.G028104.1 125 NLRAWWKEKVRFDRNGPAAISKYQADHSIPGQNEDCSA-VASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGIAPPWWPDGNE 212 ************************************77.9************************************************* PP HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XX CS EIN3 179 lwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ss 265 +ww++lgl+kdqg ppykkphdlkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee+ ++t++++ ++ HL.SW.v1.0.G028104.1 213 DWWPQLGLPKDQGSPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEESVARTMYPDrcPP 301 *************************************************************************************8666 PP XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXX................................XXXXXXXXX...XXXXXXXX CS EIN3 266 slrkqspkvtlsceqkedvegkkeskikhvqavktta................................gfpvvrkrk...kkpsesak 319 + ++ ++++s+ +++dveg + + +v+++k ++ + ++v+krk ++++++++ HL.SW.v1.0.G028104.1 302 MSGGGNGSFVMSDTSDYDVEGVSFEANVDVEECKPRDvsffnmgavagrdgllmqppvipkikgeliemNSDFVQKRKplaEESQSQSQ 390 6677****************777777688999999999***************************************933323333344 PP XXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS EIN3 320 vsskevsrtcqssqfrgsetelifadknsisqney 354 ++ + ++tc++ q+++++++ +f d++s++++++ HL.SW.v1.0.G028104.1 391 MMLDHKIYTCENLQCQYHDYRRGFLDRTSRNNHQM 425 4444667**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04873 | 7.7E-131 | 41 | 288 | No hit | No description |
Gene3D | G3DSA:1.10.3180.10 | 2.1E-75 | 161 | 298 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
SuperFamily | SSF116768 | 2.35E-61 | 167 | 291 | IPR023278 | Ethylene insensitive 3-like protein, DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MGYSGNFEFV SAPPREADEA LEHETEPTGE EDYSDEEMDV DELERRMWRD RMLLRRLKEQ 60 NKGKQGVDNA KQRQSQEQAR RKKMSRAQDG ILKYMLKMME VCKAQGFVYG IIPEKGKPVS 120 GASDNLRAWW KEKVRFDRNG PAAISKYQAD HSIPGQNEDC SAVASTPHTL QELQDTTLGS 180 LLSALMQHCD PPQRRFPLEK GIAPPWWPDG NEDWWPQLGL PKDQGSPPYK KPHDLKKAWK 240 VGVLTAVIKH MSPDIAKIRK LVRQSKCLQD KMTAKESATW LAIINQEESV ARTMYPDRCP 300 PMSGGGNGSF VMSDTSDYDV EGVSFEANVD VEECKPRDVS FFNMGAVAGR DGLLMQPPVI 360 PKIKGELIEM NSDFVQKRKP LAEESQSQSQ MMLDHKIYTC ENLQCQYHDY RRGFLDRTSR 420 NNHQMNCPYR CNNSSQAFGM SSFQISNDKP AVFSMPHSQT KSPPPAAPMN QSTQLNVSGL 480 GLPEDGQKMI SDLMSFYDTN ISPPQSKNLN IGNFSATDSH VPSQENYQFH MEDNFYSQGV 540 MGSNTSEHAN MSSSPHVAFP MSEAQFDNQC KAFDSSFDNH PTDNIVDLRF SSPFNLPPVE 600 YTVDPLPKQD SLWFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4zds_A | 4e-84 | 165 | 297 | 1 | 133 | Protein ETHYLENE INSENSITIVE 3 |
4zds_B | 4e-84 | 165 | 297 | 1 | 133 | Protein ETHYLENE INSENSITIVE 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor acting as a positive regulator in the ethylene response pathway. Is required for ethylene responsiveness in adult plant tissues. Binds a primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter with consequence to activate the transcription of this gene. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010106127.1 | 0.0 | ETHYLENE INSENSITIVE 3-like 1 protein | ||||
Swissprot | O24606 | 0.0 | EIN3_ARATH; Protein ETHYLENE INSENSITIVE 3 | ||||
TrEMBL | A0A2P5EMI5 | 0.0 | A0A2P5EMI5_TREOI; Ethylene-insensitive protein | ||||
STRING | XP_010106127.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF322 | 34 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20770.1 | 0.0 | EIL family protein |