PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G028032.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 240aa MW: 25859.2 Da PI: 9.8333

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G028032.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.1e-12	35	82	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++h+e+ErrRR+riN +++Lr+llP+ ++ +Ka+ L +v+ +k+L HL.SW.v1.0.G028032.1 35 CKSHKEAERRRRQRINAHLSTLRSLLPNI-----TRTDKASLLAGVVHRVKEL 82 689*************************6.....6999999999999888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.95E-11	31	85	No hit	No description
PROSITE profile	PS50888	14.869	33	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-9	35	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.15E-12	36	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-12	37	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	39	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MRLAFERQNW PSINLVNLMD GGDSIVSSAS KSETCKSHKE AERRRRQRIN AHLSTLRSLL 60 PNITRTDKAS LLAGVVHRVK ELREKAADVA RKDGDIWFGA GGGVTGSEPE PWPFPSESDE 120 ASLSYCEGGD SKLVKATVCC EDRLGLNRDM ARAIRSVRAR PVRAEMMTVG GRSKSVVVMQ 180 CGGGGGGGGE EDIRALRRAL KAVVENRASG SGLNQSVSGN KRSRLYGSVN EGDYELLLT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107684.1	1e-112	transcription factor bHLH30
TrEMBL	A0A2P5E1A3	1e-111	A0A2P5E1A3_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010107684.1	1e-111	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11441	28	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	2e-24	bHLH family protein