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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G027952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB_related | ||||||||
Protein Properties | Length: 122aa MW: 14478.6 Da PI: 10.4918 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.6e-17 | 64 | 108 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ HL.SW.v1.0.G027952.1 64 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 108 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-17 | 58 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.741 | 59 | 113 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 3.8E-18 | 62 | 111 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 7.3E-13 | 63 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 64 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-14 | 64 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.29E-9 | 66 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
AVPYLVLLTT TITTALLVIA FDSVRNHGKF SFYPLLVRED LKQRQLPRSD NGHTRKPYTI 60 TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ IRSHAQKFFS KVNWYLLTLS 120 SY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR813316 | 5e-61 | KR813316.1 Betula platyphylla LHY mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007139035.1 | 8e-39 | hypothetical protein PHAVU_009G259600g | ||||
Refseq | XP_007139036.1 | 8e-39 | hypothetical protein PHAVU_009G259600g | ||||
TrEMBL | W9S411 | 5e-54 | W9S411_9ROSA; Protein LHY | ||||
STRING | XP_010107134.1 | 9e-55 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2956 | 33 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46830.1 | 1e-34 | circadian clock associated 1 |