PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027567.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 340aa    MW: 38315.9 Da    PI: 5.1777
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027567.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.12.9e-20188238255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g++++eIrdp   + k+ r++lg+f+ta eAaka+++a+ kl+g
  HL.SW.v1.0.G027567.1 188 HYRGVRQRP-WGKFASEIRDP---NrKCSRVWLGTFDTAIEAAKAYDRAAFKLRG 238
                           7********.**********9...7789*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-32187247IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-22188247IPR016177DNA-binding domain
CDDcd000185.45E-31188246No hitNo description
SMARTSM003801.6E-35188252IPR001471AP2/ERF domain
PROSITE profilePS5103223.644188246IPR001471AP2/ERF domain
PfamPF008477.4E-14188238IPR001471AP2/ERF domain
PRINTSPR003671.5E-13189200IPR001471AP2/ERF domain
PRINTSPR003671.5E-13228248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAAINDVSKL EYMKQQLLGD HSPIGLSIFG QNEWSFEVNT DFSTSQSDSL CSQTSSSDSM  60
IEVADYLTPN EIFEFSSNQS DFFDFELKPE LIDLTTPKSL TLTSQSSNSS FEFESKPEII  120
DLRVATSQSN SFSDKFESKP TLRQTSCQSN RKPSLTASLP AKTEWIEFGA PKPQVSVQKK  180
SIEEEKRHYR GVRQRPWGKF ASEIRDPNRK CSRVWLGTFD TAIEAAKAYD RAAFKLRGSK  240
AILNFPLEAG KYKNNDVIDK KRHRQEEVEA ENKYEELAVV KKDKLTDFDD AVSYLKNMPL  300
TPSDWTAVWD SDGKGVFNIP PLSPLSPHPA LSYSQLMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-29187247161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104815.11e-119ethylene-responsive transcription factor 5
TrEMBLA0A2P5CVM21e-163A0A2P5CVM2_TREOI; AP2/ERF transcription factor
STRINGXP_010104815.11e-118(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.14e-58ethylene responsive element binding factor 5