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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G027235.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
NAC |
Protein Properties |
Length: 202aa MW: 22964.4 Da PI: 5.3149 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G027235.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 116.5 | 2.6e-36 | 9 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89
lppGfrF Ptdeelvv++L++kv+ +++ +vi+++++y ++Pw+L+ k+ +e+++wyf+s++ +nr+t++gyWka g +
HL.SW.v1.0.G027235.1 9 LPPGFRFYPTDEELVVHFLHRKVSLLPCHP-DVIPDLELYPYDPWELDGKALGEDNKWYFYSRKT--------QNRVTRNGYWKALGIE 88
79*************************999.99**************977778999*****9974........5899************ PP
NAM 90 kevlsk.kgelvglkktLvfykgrapkge.....ktdWvmheyrl 128
++v + ++++vg+kk +vfy g+a++ + kt+W+mhe++l
HL.SW.v1.0.G027235.1 89 EAVSGNnNTKKVGTKKYFVFYVGEAHNHNsgaaiKTNWIMHEFHL 133
***98867888**********6554443333455*********98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010089 | Biological Process | xylem development |
GO:0043067 | Biological Process | regulation of programmed cell death |
GO:0048367 | Biological Process | shoot system development |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MGDNNNVNLP PGFRFYPTDE ELVVHFLHRK VSLLPCHPDV IPDLELYPYD PWELDGKALG 60 EDNKWYFYSR KTQNRVTRNG YWKALGIEEA VSGNNNTKKV GTKKYFVFYV GEAHNHNSGA 120 AIKTNWIMHE FHLSDSASTS SSSSSSSTRS SKRRSSNKID CSKWVLCRVY ERDDDDDGTE 180 LSCLDEVFLS LDDLDEISLP N*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-37 | 5 | 173 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-37 | 5 | 173 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-37 | 5 | 173 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-37 | 5 | 173 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-37 | 5 | 173 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-37 | 5 | 173 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-37 | 5 | 173 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-37 | 5 | 173 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-37 | 5 | 173 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-37 | 5 | 173 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-37 | 5 | 173 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-37 | 5 | 173 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 2e-37 | 5 | 173 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-37 | 5 | 173 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |