PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G027079.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bZIP

Protein Properties

Length: 130aa MW: 14605.5 Da PI: 9.8824

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G027079.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.9	1.3e-14	35	90	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ++ +r+q+NRe+ArrsRqRK++ ++eL v++L +eN + ++ +++ +++ HL.SW.v1.0.G027079.1 35 RKRKRMQSNRESARRSRQRKQQHLDELMGQVANLRKENNQILTSISITTQHLMSVE 90 5779**********************************998887776666666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-19	31	95	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.1E-12	32	84	No hit	No description
PROSITE profile	PS50217	11.07	33	96	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-11	35	80	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.38E-12	35	88	No hit	No description
CDD	cd14702	9.79E-14	36	87	No hit	No description
PROSITE pattern	PS00036	0	38	53	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
MASSSGNSSG STQLIMVQNN SGSEEDLKVL MDHERKRKRM QSNRESARRS RQRKQQHLDE 60 LMGQVANLRK ENNQILTSIS ITTQHLMSVE AENSVLRAQM EELGQRLQSL NDILNYINDV 120 KVAVVVVVV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	53	RRSRQRK
2	47	54	RRSRQRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269\|PubMed:23461773}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023900550.1	1e-50	bZIP transcription factor 44-like
Swissprot	C0Z2L5	1e-37	BZP44_ARATH; bZIP transcription factor 44
TrEMBL	A0A2P5EZK3	2e-53	A0A2P5EZK3_TREOI; Basic-leucine zipper transcription factor
STRING	XP_010110029.1	5e-50	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF613	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	1e-38	basic leucine-zipper 44

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]