PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G027014.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 692aa MW: 80372.3 Da PI: 6.1467

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G027014.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.3	9.3e-22	68	159	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk t +++r r++ r+gC+ak+ ++ke d++w v ++++ Hn HL.SW.v1.0.G027014.1 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPVKKKPTGEHHRDRKSVRCGCDAKMYLSKEIvdgDSQWFVVQFSNVHN 155 59******************8888.**************************************99777899******** PP FAR1 87 Hela 90 Hel HL.SW.v1.0.G027014.1 156 HELL 159 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-19	68	159	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.3E-19	291	384	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.928	563	598	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.8E-8	570	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.6E-6	573	600	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MTSIPSKNIW IRRQQCPCGD WKCYVTYEGD AEETSIASQL VKNDSIPSEA MISPYVGMVF 60 KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPVK KKPTGEHHRD 120 RKSVRCGCDA KMYLSKEIVD GDSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLTEKRES 240 DTMELLEACK VTKYADENFV YDFTVDENDK VENITWCYSD SVHAYNMFGD VVYFDTSYRS 300 ITYGMLFGAW LGIDNNGRTI FFGCVLLQDE TSRSFSWALQ TFVRFMRGNC PQTILTDLDP 360 GLRDAIRTDL PATKHVISVW NILSKVYSWF FHPLGSRFAE FKSEFDTLCR LETTEEFELQ 420 WNQMISMFGL NADKHIGLLY SFRSCWAPSY TRGYLLARMA TTVYSKSVDG FLKGIFNAQT 480 CLRTFFEQVG ISANFQNQAR PEMQYMYTKT CIPIEEHARS ILTPFAFNEF QHELALSMQY 540 ATSEMANGSY IVRHCKKMDG ERLVIWVPED EQIHCSCKEF ESSGLLCRHA LRVFIVKNYF 600 QLPEKYYLNR WRRESCLVFY EENGTQPSND DWFPEFQCLT ESLFVESSIT RERSDYVRTE 660 LTKQVARILN EVRNMPETEG VVLDVTLSPT G*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MTSIPSKNIW IRRQQCPCGD WKCYVTYEGD AEETSIASQL VKNDSIPSEA MISPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPVK KKPTGEHHRD  120
RKSVRCGCDA KMYLSKEIVD GDSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN DALLTEKRES  240
DTMELLEACK VTKYADENFV YDFTVDENDK VENITWCYSD SVHAYNMFGD VVYFDTSYRS  300
ITYGMLFGAW LGIDNNGRTI FFGCVLLQDE TSRSFSWALQ TFVRFMRGNC PQTILTDLDP  360
GLRDAIRTDL PATKHVISVW NILSKVYSWF FHPLGSRFAE FKSEFDTLCR LETTEEFELQ  420
WNQMISMFGL NADKHIGLLY SFRSCWAPSY TRGYLLARMA TTVYSKSVDG FLKGIFNAQT  480
CLRTFFEQVG ISANFQNQAR PEMQYMYTKT CIPIEEHARS ILTPFAFNEF QHELALSMQY  540
ATSEMANGSY IVRHCKKMDG ERLVIWVPED EQIHCSCKEF ESSGLLCRHA LRVFIVKNYF  600
QLPEKYYLNR WRRESCLVFY EENGTQPSND DWFPEFQCLT ESLFVESSIT RERSDYVRTE  660
LTKQVARILN EVRNMPETEG VVLDVTLSPT G*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010087643.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Refseq	XP_024022178.1	0.0	putative protein FAR1-RELATED SEQUENCE 10
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	W9QZ88	0.0	W9QZ88_9ROSA; Uncharacterized protein
STRING	XP_010087643.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]