PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026980.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 207aa    MW: 23364.9 Da    PI: 5.4291
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026980.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-124184755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           +ErrRR+++N+++ +Lr l+Pk      + + Ka+i+  A+ YI++Lq
  HL.SW.v1.0.G026980.1 41 HAERRRREKLNDKLLRLRGLVPKI-----TNMKKATIVDDAIAYISELQ 84
                          79*********************6.....5799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-163394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.3923483IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.16E-103684No hitNo description
PfamPF000106.5E-103984IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-144094IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-124089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDHFILGSGL DELCIGENGR LGRQNPENEQ TESNFKSKNL HAERRRREKL NDKLLRLRGL  60
VPKITNMKKA TIVDDAIAYI SELQSTVDTL QDQLLGIETS SVERSEPKKD DIHVHAAEEN  120
KELWLQPDIT VAQIFENKLW IKVIFEKKQG GFTKLIEALS ALGFEITDTN LTTLKGVVLV  180
TLCLQGFSRE LLTVEEIKEL LLKVVN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247ERRRRE
24348RRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021809344.13e-67transcription factor DYT1-like
RefseqXP_024157940.19e-67transcription factor DYT1-like
TrEMBLA0A2P5BMW14e-99A0A2P5BMW1_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_008225011.17e-70(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.19e-36bHLH family protein