PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026813.1
Common NamebHLH2
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 581aa    MW: 64157.9 Da    PI: 5.0242
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026813.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-14360407355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           ++h ++ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  HL.SW.v1.0.G026813.1 360 ANHVMAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 407
                           5899***********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.1E-112565IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.638357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-20359429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-12360406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-19361422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.48E-16361411No hitNo description
SMARTSM003532.5E-18363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MEYKILSQLT YVSLMFLCMG AIVPHQSAGV QTVVCIPLLD GVVEFGTTER VKEDLGFIQH  60
AKTFFIDHHH HLTNSLPSKP ALSEQSTSNP ATSDNPRFHS QPMTTAIYSG AATGVVDETK  120
EDEGDEEDDD MDEEEAAESD SEAEIGRSNV GGGPISAQNT SGEAVVPAEP SELMQLDMSE  180
DIRLGSPDDG SNNLDSDFHL LAVSQSERHL CQPDSYPAES TPRWPLLPDP TTNIGLLLPS  240
SGATDPLEDL THEDTHYSQT VSAILQNQPS LWTESSSAGY VMYSTQSAFA KWTNLSDHHS  300
IFHMSPSAES TSQWLLKYIL FSVPLLHTKY RDENSPKAGA GDTTTRSFRK GGTPQDELSA  360
NHVMAERRRR EKLNERFIIL RSLVPFVTKM DKASILGDTI EYVKQLRKKV QDLESRNRLM  420
ELDQRSMKPA VPQRTCSTGS LKDQRSGLTS VDRIRVEKPG SEKRKLRIVE GIHGVAKPKS  480
VDQSASPPPS TRAETTVQVS IIENDGLLEL QCPYREGLLL ELMQMLKDLR IETTTVNSSL  540
SDGFFSIELR AKVKENVNGR KASIVEVKRA INQIIPHSDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14361422874Transcription factor MYC2
5gnj_B2e-14361422874Transcription factor MYC2
5gnj_E2e-14361422874Transcription factor MYC2
5gnj_F2e-14361422874Transcription factor MYC2
5gnj_G2e-14361422874Transcription factor MYC2
5gnj_I2e-14361422874Transcription factor MYC2
5gnj_M2e-14361422874Transcription factor MYC2
5gnj_N2e-14361422874Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1365370ERRRRE
2366371RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR7515530.0FR751553.1 Humulus lupulus mRNA for basic helix-loop-helix transcription factor (bHLH2 gene), cultivar Osvald's 72, clone 3497.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015892114.10.0basic helix-loop-helix protein A
SwissprotE3SXU41e-169BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLG7ZLA20.0G7ZLA2_HUMLU; Basic helix-loop-helix transcription factor
STRINGXP_010090392.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.14e-49bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]