PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G026792.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

LBD

Protein Properties

Length: 179aa MW: 18994.5 Da PI: 8.1352

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G026792.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.9	1.2e-45	21	120	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ HL.SW.v1.0.G026792.1 21 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHHRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDV 109 7************************************************************************************** PP DUF260 90 lkaelallkee 100 l+a+lal+++e HL.SW.v1.0.G026792.1 110 LQAQLALAQAE 120 ****99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.162	20	121	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.4E-45	21	118	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MKDTSSSGGG GGGRKQGAPS PCAACKLLRR RCAQDCVFAP YFPADEPQKF ANVHKVFGAS 60 NVNKMLQELP VHHRGDAVSS MVYEANARVR DPVYGCVGAI SSLQQQIDVL QAQLALAQAE 120 VVHLRVRQNA SLSSHGLSPA SPSNSDSPSS KLMGSQPKPI FEMDMSVDQG SFGETMWC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-49	17	122	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-49	17	122	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022777251.1	1e-105	LOB domain-containing protein 4 isoform X1
Swissprot	Q9SHE9	1e-76	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A314YWZ3	1e-104	A0A314YWZ3_PRUYE; LOB domain-containing protein 4
STRING	XP_009353911.1	1e-103	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-71	LOB domain-containing protein 4