PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G026753.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

GRF

Protein Properties

Length: 200aa MW: 22260 Da PI: 9.6965

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G026753.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.4	1.2e-23	103	146	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rCrRtDGKkWRCs+++l+ +k+CErH+hrgr+rsrk ++ HL.SW.v1.0.G026753.1 103 DNEPWRCRRTDGKKWRCSKEALPHQKYCERHIHRGRHRSRKLVD 146 68***************************************987 PP
2	QLQ	38.6	3.4e-14	41	74	3	36
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FT Ql++L Q l+yKy+ a++PvP +L+q+i+ HL.SW.v1.0.G026753.1 41 FTILQLHELQLQTLIYKYIEAGLPVPYNLVQPIW 74 7778*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.9E-4	39	75	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.645	40	75	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.4E-11	41	74	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.417	103	147	IPR014977	WRC domain
Pfam	PF08879	4.0E-20	105	145	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MAHFTSSGFG QEEGSSQIGL NLELGRGVCQ NKRSSSSYHG FTILQLHELQ LQTLIYKYIE 60 AGLPVPYNLV QPIWQSFSSS ITGLNNGLGV VGPLYLDSRK GMDNEPWRCR RTDGKKWRCS 120 KEALPHQKYC ERHIHRGRHR SRKLVDSCNS KTTTMANTST SNNGGGGIGS TMTDLSISLH 180 VNENNTRGFL FPRLDFQPN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024029096.1	2e-58	growth-regulating factor 10
Swissprot	Q6EPP9	4e-38	GRF10_ORYSJ; Growth-regulating factor 10
TrEMBL	A0A2P5CSQ9	5e-86	A0A2P5CSQ9_TREOI; Growth-regulating factor
STRING	VIT_02s0025g04910.t01	8e-55	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14195	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	3e-29	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]