PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026658.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 415aa    MW: 46653.7 Da    PI: 6.9153
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026658.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT+eEd+ l+d +k+ G g+W+t ++  g++R++k+c++rw +yl
  HL.SW.v1.0.G026658.1 14 KGPWTPEEDQALIDHIKKNGHGRWRTLPKNAGLKRCGKSCRLRWTNYL 61
                          79********************************************97 PP
2Myb_DNA-binding53.26.9e-1767111147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  HL.SW.v1.0.G026658.1  67 RGRFSFEEEEAIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                           89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-25564IPR009057Homeodomain-like
PROSITE profilePS5129419961IPR017930Myb domain
SuperFamilySSF466891.35E-3011108IPR009057Homeodomain-like
SMARTSM007175.3E-151363IPR001005SANT/Myb domain
PfamPF002492.9E-151461IPR001005SANT/Myb domain
CDDcd001674.75E-121661No hitNo description
PROSITE profilePS5129425.44662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2665116IPR009057Homeodomain-like
SMARTSM007172.2E-1666114IPR001005SANT/Myb domain
PfamPF002494.0E-1567111IPR001005SANT/Myb domain
CDDcd001674.57E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGKTPCCEKN GLKKGPWTPE EDQALIDHIK KNGHGRWRTL PKNAGLKRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEEAIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLKMG  120
IDPVTHTPRL DLLELSSLLN STLCNSQLSY LINSYNNNNL LGNMGSPLVN NQNLLTLASA  180
LLSNQPKTMP QNIVQDQNQL YDDNSYNNIS HEQNDQSQYC DQQGQFPFLN ETQFMQSKME  240
QFSQSTTHHD DQYHQNLDQY HSLNQGLVTG VENTTIATSF APMGVTSNGY NHHRDISVQS  300
STSTSTTSSM LNSSPAESYW PELVYSSNNI IGQTRTNMMT PINNTMSFGT SSLLSTPSSS  360
STVPANTYNN LNSGSTTTTT TTTTTHEDER DSFCSNFLMY HDITNAFNGH ELIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281638.11e-114PREDICTED: transcription factor MYB35
TrEMBLA0A2P5F3L51e-162A0A2P5F3L5_TREOI; MYB transcription factor
STRINGVIT_19s0014g03820.t011e-114(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.15e-85myb domain protein 74