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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G026417.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
NAC |
Protein Properties |
Length: 357aa MW: 40150.3 Da PI: 6.7958 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G026417.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 107.5 | 1.6e-33 | 67 | 207 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79
lp+G++F+Ptd+e++ e+L++kv++++ ++++ ++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++
HL.SW.v1.0.G026417.1 67 LPAGVKFDPTDHEIL-EHLEAKVHSDSgklhplIDEFIPtLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVNtd 153
799***********9.99******9997775443332222443336**********.555666777******************74445 PP
NAM 80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
+ +W++tgk+++v++ +g ++g kk+Lv+y gr++k+ekt+Wvmh+y+l
HL.SW.v1.0.G026417.1 154 edgsETRWHKTGKTRPVFV-GGGVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 207
6555788************.999***********66589**************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
GO:0005634 | Cellular Component | nucleus |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MTWCDESEEE RSNIQIITAA TTTTTDVSVV TNNNNNTNQS RSVIICPSCG HHIQFQDQAG 60 IHDLPGLPAG VKFDPTDHEI LEHLEAKVHS DSGKLHPLID EFIPTLEGEN GICYTHPEKL 120 PGVSKDGQIR HFFHRPSKAY TTGTRKRRKV NTDEDGSETR WHKTGKTRPV FVGGGVKGFK 180 KILVLYTNYG RQRKPEKTNW VMHQYHLGNN EEEKDGELVA SKVFYQTQPR QCGSSSLIIK 240 DQSIIFDHTT TSTTTTTSMN MRSSSGFEDD DDHHHRDRDC DQDHGHNHYH LAKKATLHQV 300 GQYNNYSIPN PFLNYDDEGS HNRESPPQLI PNLVVQGDGS SFIHRLTTDA SKGKLS*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |