PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G026316.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 366aa MW: 38908.6 Da PI: 8.1021

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G026316.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	5.9e-39	27	84	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ HL.SW.v1.0.G026316.1 27 ALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 84 689****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	27	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-33	28	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MASSDHHGRP TMEKQSQEQL QQQQGLALKC PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR 60 YWTRGGTLRN VPVGGGCRKN KRVKRPSSGT ANSDGSGANS SSSSANNNSH PGSLLGQPHQ 120 IDLSSTSHMI SPLFYGLPGN PSSDMSHVLP FSRFMNSTAS GYDLHDQPQL INALGLGFSS 180 SSAAAGNIND SDHHYQNGFS STTTPKYIQD IVSSNSLFST YNSLFSASTP LSSATGASPT 240 IASLFASKFA NGGLKDSRGP MNHFHQPLTV PFEDLHIGNA AAANGGGGED LNLSTKQAVK 300 LEDHGQRRFD WSSSAAAAAD CQNQTEQIGL SPSDPSLYWN PTVAVGTNWH DPTNSSIGSS 360 VPSLI*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MASSDHHGRP TMEKQSQEQL QQQQGLALKC PRCDSSNTKF CYYNNYSLSQ PRHFCKACKR  60
YWTRGGTLRN VPVGGGCRKN KRVKRPSSGT ANSDGSGANS SSSSANNNSH PGSLLGQPHQ  120
IDLSSTSHMI SPLFYGLPGN PSSDMSHVLP FSRFMNSTAS GYDLHDQPQL INALGLGFSS  180
SSAAAGNIND SDHHYQNGFS STTTPKYIQD IVSSNSLFST YNSLFSASTP LSSATGASPT  240
IASLFASKFA NGGLKDSRGP MNHFHQPLTV PFEDLHIGNA AAANGGGGED LNLSTKQAVK  300
LEDHGQRRFD WSSSAAAAAD CQNQTEQIGL SPSDPSLYWN PTVAVGTNWH DPTNSSIGSS  360
VPSLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015890946.1	1e-100	dof zinc finger protein DOF1.4-like
TrEMBL	A0A2P5AMS6	1e-149	A0A2P5AMS6_PARAD; Zinc finger transcription factor
STRING	XP_006467767.1	6e-98	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	9e-37	Dof family protein