PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

HD-ZIP

Protein Properties

Length: 235aa MW: 26663 Da PI: 8.1834

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G026259.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	72	125	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k HL.SW.v1.0.G026259.1 72 KKKRLTTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 125 56679************************************************9 PP
2	HD-ZIP_I/II	116.5	1.5e-37	72	162	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kk+rl+++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk+++da+++e+++L++ev +L+ HL.SW.v1.0.G026259.1 72 KKKRLTTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDALKQELDAMSKEKQKLQEEVMKLKGM 160 9*************************************************************************************987 PP HD-ZIP_I/II 91 lk 92 l+ HL.SW.v1.0.G026259.1 161 LR 162 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-19	55	129	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	67	127	IPR001356	Homeobox domain
SMART	SM00389	4.5E-16	70	131	IPR001356	Homeobox domain
CDD	cd00086	5.36E-16	72	128	No hit	No description
Pfam	PF00046	9.5E-17	72	125	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.3E-20	74	134	IPR009057	Homeodomain-like
PRINTS	PR00031	7.6E-5	98	107	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	102	125	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.6E-5	107	123	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-7	127	161	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDWNSNLRLV SRPECSYGFL YNYNYDQYQG MDMKHHQAAL MGETTQGLGL LGVPSMEKVN 60 GSSSSYGSHQ DKKKRLTTDQ LESLERSFQE EIKLDPDRKM KLSRDLGLQP RQIAVWFQNR 120 RARWKAKQLE RLYDALKQEL DAMSKEKQKL QEEVMKLKGM LREQGGWKQV STTGGYTEIS 180 GEDTVESTSA GAIRSTSKSL GTNPMGAAAE CSHHILNVEE YNPVSPPYWL PSYP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	RRARWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015898574.1	1e-112	putative homeobox-leucine zipper protein ATHB-51 isoform X1
Swissprot	Q9LZR0	5e-54	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A2P5FVQ0	1e-124	A0A2P5FVQ0_TREOI; Octamer-binding transcription factor
STRING	XP_008241330.1	1e-105	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-56	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]