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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
HL.SW.v1.0.G025856.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family |
NAC |
Protein Properties |
Length: 332aa MW: 36933.7 Da PI: 9.7367 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
HL.SW.v1.0.G025856.1 | genome | HOPBASE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 36.6 | 1.3e-11 | 16 | 55 | 1 | 41 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiyk 41
lppGfrFhPtdeel+++yL kkv ++++ + ++i evd++k
HL.SW.v1.0.G025856.1 16 LPPGFRFHPTDEELISHYLYKKVVDTSFLC-RAIGEVDLNK 55
79*************************988.88***99986 PP
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2 | NAM | 90.1 | 3.8e-28 | 54 | 119 | 63 | 129 |
NAM 63 krdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
++d+ky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgek++Wvmheyrle
HL.SW.v1.0.G025856.1 54 NKDRKYPTGLRTNRATEAGYWKATGKDKEIYR-GKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 119
589*****************************.999*****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MANVIGTVKE DEQLDLPPGF RFHPTDEELI SHYLYKKVVD TSFLCRAIGE VDLNKDRKYP 60 TGLRTNRATE AGYWKATGKD KEIYRGKSLV GMKKTLVFYK GRAPKGEKSN WVMHEYRLEG 120 KFSVHNLPKT AKKSSGGKKI PITGLSRLSP FGNEMGSFGL PPLMDSSSPY SNKSKPVLHS 180 VNVPCFSSPM NNNNILRNQD ETTMDSLNIN SLYGVVSNSP STNVVLPRIP LPNSLYSAQN 240 AAVSSHMQFP NFLMVHHNNN NNNGDDQSIL RSLVENNGSN LRQIFKTERE TVMNSEVNTS 300 VMANLEMGRR PFGNQATASA GSVDMESFWN Y*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-34 | 13 | 118 | 14 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-34 | 13 | 118 | 14 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-34 | 13 | 118 | 14 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-34 | 13 | 118 | 14 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-34 | 13 | 118 | 17 | 145 | NAC domain-containing protein 19 |
3swm_B | 3e-34 | 13 | 118 | 17 | 145 | NAC domain-containing protein 19 |
3swm_C | 3e-34 | 13 | 118 | 17 | 145 | NAC domain-containing protein 19 |
3swm_D | 3e-34 | 13 | 118 | 17 | 145 | NAC domain-containing protein 19 |
3swp_A | 3e-34 | 13 | 118 | 17 | 145 | NAC domain-containing protein 19 |
3swp_B | 3e-34 | 13 | 118 | 17 | 145 | NAC domain-containing protein 19 |
3swp_C | 3e-34 | 13 | 118 | 17 | 145 | NAC domain-containing protein 19 |
3swp_D | 3e-34 | 13 | 118 | 17 | 145 | NAC domain-containing protein 19 |
4dul_A | 3e-34 | 13 | 118 | 14 | 142 | NAC domain-containing protein 19 |
4dul_B | 3e-34 | 13 | 118 | 14 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |