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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G025639.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | MYB_related | ||||||||
Protein Properties | Length: 590aa MW: 65327.1 Da PI: 9.6273 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1e-08 | 129 | 171 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE ++l +++kq+ + + Ia ++++ Rt +++k+r+++ HL.SW.v1.0.G025639.1 129 TWTKEETDQLFNLCKQFDLR-FVVIADRFPTSRTVEELKDRYYS 171 7*******************.*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16282 | 8.5E-32 | 102 | 176 | IPR032563 | DAMP1, SANT/Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-7 | 124 | 175 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.12E-7 | 125 | 178 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-10 | 126 | 175 | IPR001005 | SANT/Myb domain |
CDD | cd11658 | 6.00E-20 | 130 | 173 | No hit | No description |
Pfam | PF05499 | 2.7E-7 | 464 | 528 | IPR008468 | DNA methyltransferase 1-associated 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0000812 | Cellular Component | Swr1 complex | ||||
GO:0035267 | Cellular Component | NuA4 histone acetyltransferase complex | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MDAKDILGLP KNAHPVAQEK KSRPQKDSHR KPDGISREVY ALTGGVPPLM PSIDLSQLRK 60 RPPADEKITW QWLPFTSSAR NDNLQLYHWV RVVNGAPPTG DYSFAKYNKS ADIVQYTDEE 120 YEKHLTDSTW TKEETDQLFN LCKQFDLRFV VIADRFPTSR TVEELKDRYY SVCRAMLIAR 180 APSPADVSGH PIIKEPYNVS QERERKRALS MVLSQTKQQE KKDVEVLAEA KKITESRSAA 240 KAAEEVELPV ASNVGTEYTE RTTIPGDTVS PSPNVQVPSA VVAAPSTLAA DNAATVASLR 300 MLRVYLRTYA LDQMIQAASA SAGLRTIKRV EQTLQELGEP YNVSQERERK RALSMVLSQT 360 KQQEKKDVEV LAEAKKITES RSVAKAAEEV ELPVASNVGT EYTERTTIPG DTVSPSPNVQ 420 VPSTVVAAPS TLAADNAATV ASLRMLRVYL RTYALDQMIQ AASASAGLRT IKRVEQTLQE 480 LGVNLKPRVP TKAVCAEHLE LRKEILTLLN LQKQLQYKET EGSSFRDNPY EAPGTPKDRM 540 FIPDSMNFGG ERAGKRDQKR KAPGRGGSEA PSSPAQSNKR PRKLKASDL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3hm5_A | 3e-21 | 101 | 186 | 4 | 93 | DNA methyltransferase 1-associated protein 1 |
4iej_A | 3e-21 | 101 | 186 | 4 | 93 | DNA methyltransferase 1-associated protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010094407.2 | 0.0 | SWR1-complex protein 4 | ||||
Swissprot | Q8VZL6 | 1e-174 | SWC4_ARATH; SWR1-complex protein 4 | ||||
TrEMBL | W9R6Q2 | 0.0 | W9R6Q2_9ROSA; DNA methyltransferase 1-associated protein 1 | ||||
STRING | XP_010094407.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4975 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47210.1 | 1e-166 | MYB_related family protein |
Publications ? help Back to Top | |||
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