PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025268.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 278aa    MW: 29388.1 Da    PI: 9.0505
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025268.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.2e-0883108227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           kt+lC+ f     Ck+G++C+FaHg+
  HL.SW.v1.0.G025268.1  83 KTRLCNKFNSAEGCKFGEKCHFAHGE 108
                           8***********************96 PP
2zf-CCCH32.71.2e-10244268126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt++C++f + G C +G+rC+FaHg
  HL.SW.v1.0.G025268.1 244 FKTKICDNFTK-GSCTFGERCHFAHG 268
                           69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.2961442IPR000571Zinc finger, CCCH-type
SMARTSM003562.51441IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-81439IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-61441IPR000571Zinc finger, CCCH-type
PfamPF146081.52239No hitNo description
Gene3DG3DSA:4.10.1000.104.4E-1479113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-880112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.38581109IPR000571Zinc finger, CCCH-type
SMARTSM003560.002781108IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-683108IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.34E-15135215IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.9E-16144213IPR004088K Homology domain, type 1
SMARTSM003223.8E-12144214IPR004087K Homology domain
PROSITE profilePS5008414.257145209IPR004088K Homology domain, type 1
CDDcd001053.47E-14147209No hitNo description
PfamPF000131.4E-11147211IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.6E-15240274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-8243273IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.108243270IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7243269IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8244268IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MFSTEMESFT PGIRSKSKPC TKFFSTAGCP FGEGCHFLHY VPGGLKTVSH LINVGGSPAL  60
PPSARNPVAP PSFPDSSSPQ AVKTRLCNKF NSAEGCKFGE KCHFAHGEWE LGKPTLPSYE  120
DHRGRMGGRM EPPPSHGLAA SFGASSTAKI SVDSSLAGAI IGKNGVNSKQ ICRATGAKLS  180
IRDHETDPNL RNIELEGTFD QIKQASTMVR ELIVNVGSSM AANHTKSHHG GGGTGHSSST  240
GSNFKTKICD NFTKGSCTFG ERCHFAHGAH ELRKTGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875946.11e-151zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2P5BJ511e-146A0A2P5BJ51_PARAD; Polyribonucleotide nucleotidyltransferase
STRINGXP_010087387.11e-141(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-74C3H family protein