PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G025246.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 816aa MW: 93768.9 Da PI: 6.8427

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G025246.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.2	6.7e-24	137	223	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA GFs+rk+ +ks+ ng +++r+++C+++g+r + ++ ++r++r+etrtgC a++++ ++ ++k++vt++e++HnHe++ HL.SW.v1.0.G025246.1 137 CYSRYAVLEGFSIRKDFVNKSRINGAVVSRRYTCYRQGYRPAKPNT--NARKPRQETRTGCLAHMTIARQPNDKFRVTHFETKHNHEFV 223 7**************************************99988..9************************************97 PP
2	FAR1	91.9	8.3e-29	271	359	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA +vGFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ + +r+r+etr+gC a+l++++++dgk++vt++e++HnHel HL.SW.v1.0.G025246.1 271 EFYNAYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQRDKRD-MNVKRPRKETRIGCLAQLVISRQSDGKYRVTHFEEKHNHEL 358 6*****************************************999.99************************************9 PP FAR1 90 a 90 + HL.SW.v1.0.G025246.1 359 V 359 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-22	137	223	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.2E-26	271	359	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.1E-27	480	574	IPR018289	MULE transposase domain
Pfam	PF04434	2.1E-4	760	795	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.953	760	796	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0016	771	798	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 816 aa Download sequence Send to blast
MDSNEPDISS GLQKENEEKC QSPRGSASEM SQVVIDGAYY PSEGKILNNV EESGVVSSTE 60 HKGQSPNASS VDIDDEECQT AKLASVNKCE MDVDYSRFES SSADVSESGR GVKDEEDLYL 120 VPDVGIEFES EDHAYKCYSR YAVLEGFSIR KDFVNKSRIN GAVVSRRYTC YRQGYRPAKP 180 NTNARKPRQE TRTGCLAHMT IARQPNDKFR VTHFETKHNH EFVTSSTTHM LPSQKRLTFA 240 QAVEDELVNH CAIDGVPKLG MGFDSEDRAY EFYNAYAGRV GFSVRKDYVN RSKIDGAVAS 300 RRFTCFREGF RQRDKRDMNV KRPRKETRIG CLAQLVISRQ SDGKYRVTHF EEKHNHELVA 360 PCRIHMLRSQ KRLVVTQVEG SLVDSSNGQP LSAPELLCKT VGDCNDLYYN PIDYKSKLPF 420 KCTREIREGE GGKMQQYFLG KHSKNPSFFS AMQPDADGQI TNVFWADAKM LMDYGDFGDV 480 VCFDTSYKLH KDCRPFALFI GINHHKQIVI FGAALLYDET LESYNWLFRT FIEAMSSKKP 540 KTILTDQDVV MAEAINTVLR GTHHRTCLWH LYQNAAKQLG YMIAGSSSFI NDLSHCFFDL 600 EEEEDFSNAW KAMLDLYGLW ENDWLHEIYE NREKWAMPYR RHIFCADIES ALRFEAFTTN 660 LRKYLNPDSD VIPLLKHLAK VVNSFHYKEL EANYDMNQHP PKLMGDVIFL KHARDFYTPP 720 VFELFQHEYE TCLNIIVNQC THSGALFQYK VSLYGHEREY TVTFNAADET IACNCMKFEF 780 VGVLCSHALK VLDYRNIKLL PTKYLLKRWT KDARV*

Sequence ? help Back to Top

Protein Sequence Length: 816 aa Download sequence Send to blast

MDSNEPDISS GLQKENEEKC QSPRGSASEM SQVVIDGAYY PSEGKILNNV EESGVVSSTE  60
HKGQSPNASS VDIDDEECQT AKLASVNKCE MDVDYSRFES SSADVSESGR GVKDEEDLYL  120
VPDVGIEFES EDHAYKCYSR YAVLEGFSIR KDFVNKSRIN GAVVSRRYTC YRQGYRPAKP  180
NTNARKPRQE TRTGCLAHMT IARQPNDKFR VTHFETKHNH EFVTSSTTHM LPSQKRLTFA  240
QAVEDELVNH CAIDGVPKLG MGFDSEDRAY EFYNAYAGRV GFSVRKDYVN RSKIDGAVAS  300
RRFTCFREGF RQRDKRDMNV KRPRKETRIG CLAQLVISRQ SDGKYRVTHF EEKHNHELVA  360
PCRIHMLRSQ KRLVVTQVEG SLVDSSNGQP LSAPELLCKT VGDCNDLYYN PIDYKSKLPF  420
KCTREIREGE GGKMQQYFLG KHSKNPSFFS AMQPDADGQI TNVFWADAKM LMDYGDFGDV  480
VCFDTSYKLH KDCRPFALFI GINHHKQIVI FGAALLYDET LESYNWLFRT FIEAMSSKKP  540
KTILTDQDVV MAEAINTVLR GTHHRTCLWH LYQNAAKQLG YMIAGSSSFI NDLSHCFFDL  600
EEEEDFSNAW KAMLDLYGLW ENDWLHEIYE NREKWAMPYR RHIFCADIES ALRFEAFTTN  660
LRKYLNPDSD VIPLLKHLAK VVNSFHYKEL EANYDMNQHP PKLMGDVIFL KHARDFYTPP  720
VFELFQHEYE TCLNIIVNQC THSGALFQYK VSLYGHEREY TVTFNAADET IACNCMKFEF  780
VGVLCSHALK VLDYRNIKLL PTKYLLKRWT KDARV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024031341.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I4E4L0	0.0	A0A2I4E4L0_JUGRE; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_008230452.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-119	FAR1-related sequence 5