PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G024424.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

LBD

Protein Properties

Length: 228aa MW: 24774 Da PI: 7.8322

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G024424.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.4	3.4e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ ++++++a+p+++r+++++sl+yeA r+ +Pv+Gavg+++ ++ HL.SW.v1.0.G024424.1 2 SCNGCRVLRKGCSDNCMLRECLqwietPQAQAHATLFVAKFFGRAGLMSFISAVPQHQRPALFQSLLYEAVGRTVNPVNGAVGLLWMGN 90 6************************************************************************************** PP DUF260 85 qqleqlkaelall 97 ++++q+++e++l+ HL.SW.v1.0.G024424.1 91 WHVCQAAVETVLR 103 *****998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.165	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.4E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MSCNGCRVLR KGCSDNCMLR ECLQWIETPQ AQAHATLFVA KFFGRAGLMS FISAVPQHQR 60 PALFQSLLYE AVGRTVNPVN GAVGLLWMGN WHVCQAAVET VLRGGVLGPL SESAHDNNNA 120 ASSDHPSVSR RLWPKKRPSS STTTATFDES IHDHDRHAAD PYVLSPSDLD LCLMAAGTKM 180 VEKRRAVTPT SEEESETTTL NSSSVDSSTF LGDGGSHKRS KLLRLFM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007199277.1	1e-79	LOB domain-containing protein 38
Refseq	XP_021832795.1	1e-79	LOB domain-containing protein 38-like
Swissprot	Q9FN11	2e-67	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2P5DNE7	1e-102	A0A2P5DNE7_PARAD; Lateral organ boundaries domain containing protein
STRING	EMJ00476	5e-79	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	5e-69	LOB domain-containing protein 39

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]