PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G023916.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 508aa    MW: 56424.7 Da    PI: 8.4715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G023916.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-09424450530
                           HHHHHHHHHHHHHHHHHHHHCTSCC.C CS
                   HLH   5 hnerErrRRdriNsafeeLrellPk.a 30 
                           h + Er+RR+++N++f+ Lr+llP+  
  HL.SW.v1.0.G023916.1 424 HMISERKRREKLNESFQSLRSLLPPgT 450
                           8899********************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.232419475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-8419458IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.10E-6419452No hitNo description
Gene3DG3DSA:4.10.280.102.0E-7422450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-6424450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDAAFSLDSN YRSNFVRYVF FFFDGLYYED INTQLPSSRS LARTLFDEYR QSIILGVSAN  60
DQIPGLAFRN RSPYLELQEL DLLRLASNDT QRRFYAEAGI RTAVFMGCRT GEIEVGLPNV  120
PEVKLELRNW FPEDFSSQSQ VAASDQDHQI IPSQSQLAEQ INNPIIKPPT DANQNPLAAS  180
SSSSSLRSLS MDNNNNNSPE YSSLLFNINN PTASTTTSSS HILSIINNNP EIAHAELLIN  240
PNNSLLQPSF SPNTTTTSAP PPQVLLMPHQ QQMQAFASLR QTQFPSPESE EAAMTKAILA  300
VLTSPSQDPT SSSSSASLYS SDHHQQQHHH RQWVNQKSSA FKNYTSSPST SPTPLLSPHR  360
HHHHHRLSLG KNMFKRSVSF FRSLNFVRTR HRLQAAAASA AAAAAAATTS GTAYRPTTST  420
QLHHMISERK RREKLNESFQ SLRSLLPPGT KSVNHVSLMS MEANTQSSAS TTTSLHRLTL  480
RLRVEGSEWD ESTFQEAVRR VVADLAQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1427432ERKRRE
2428433RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017205.12e-93putative transcription factor bHLH041 isoform X2
TrEMBLA0A2P5EFX71e-144A0A2P5EFX7_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010090062.11e-91(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-13bHLH family protein