PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G022846.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 228aa MW: 25390 Da PI: 9.0454

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G022846.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	83	133	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h +Er+RR+++ + + Lr+llP + ++K s ++ + +YIk+Lq HL.SW.v1.0.G022846.1 83 MKHRDIERQRRQEMATLHASLRSLLPLeL---IKGKRSISDHINEGARYIKQLQ 133 68***********************78...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-10	77	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.30E-7	78	137	No hit	No description
PROSITE profile	PS50888	11.852	80	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.9E-7	83	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-7	84	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MFPLHRSNEL CFQISPNPQK KKAIFSEDQI LGHASLEDNA FHVDNYKEII TTSRRSPKSF 60 PNTSTIVNHN SATISENKSN KMMKHRDIER QRRQEMATLH ASLRSLLPLE LIKGKRSISD 120 HINEGARYIK QLQLKIKELD AKRDDLKKYA YLSDSSSTEP TNHRHGQAGS STSCTPPPQG 180 HFLRVQPCGC GVEIVISSCE FGGLSALPLS KVLQVILEEG LALVSCI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024029681.1	8e-70	transcription factor bHLH120 isoform X2
TrEMBL	A0A2P5D9K2	1e-104	A0A2P5D9K2_PARAD; Basic helix-loop-helix transcription factor
STRING	XP_010109067.1	2e-68	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF792	33	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	2e-35	bHLH family protein