PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G022805.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 423aa    MW: 47563.5 Da    PI: 5.9552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G022805.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.6e-14206257155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  HL.SW.v1.0.G022805.1 206 QRMTHIAVERNRRRQMNDHLNVLRSLMPTS---YIQRGDQASIVGGAIDFVKELE 257
                           79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.23E-12204259No hitNo description
SuperFamilySSF474592.22E-16205275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.777205256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-11206257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-14206271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-9211262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MERLQGPINP CFFSEHMDME CLEQGLTTSS GSLRFEEEEA CVFTQGLEER MPFLQMLQSV  60
DSSSFLPLKD PSFQTLLRLQ HMKKPWEADI DVSYHHSVPQ LDTQQLQGLE FESCVTNEIV  120
ELHSPIKSET KDVQYQHSTT SGPEQAGASS ECNQERQPNN VEQQCVNNPQ TTFKQTQNSK  180
FPPVGRERRK RKRTRPAKNK EEVESQRMTH IAVERNRRRQ MNDHLNVLRS LMPTSYIQRG  240
DQASIVGGAI DFVKELEQLF QSLEAQKRMR KAEGQRSTAS NAVENSVSSS SSSSSSAVAM  300
PSHGLYMSLS QFRLGPDQEE NIISLGDEVR AENKSEAADI VVTVIQTHVN LKIQCPRRPG  360
QLLKAIVALE DLRLAILHLN ITSSQATVLY SFNLKIEDEC KLGSADEIAG AVHQIFRFID  420
AT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192RRKRKR
2206217RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015888894.11e-178transcription factor bHLH67 isoform X2
TrEMBLA0A2P5FHC30.0A0A2P5FHC3_TREOI; Basic helix-loop-helix transcription factor
STRINGEMJ192391e-165(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-84bHLH family protein